Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_G03
         (770 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY035206-1|AAK59373.1| 1235|Drosophila melanogaster protein phos...    29   7.1  
AF011791-1|AAB69991.2| 1107|Drosophila melanogaster Bifocal prot...    29   7.1  
AE014298-1662|AAF48076.1| 1108|Drosophila melanogaster CG1822-PC...    29   7.1  
AE014298-1661|AAN09639.1| 1235|Drosophila melanogaster CG1822-PB...    29   7.1  
AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA...    29   7.1  
AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymera...    29   7.1  

>AY035206-1|AAK59373.1| 1235|Drosophila melanogaster protein
           phosphatase 1-bindingprotein Bifocal protein.
          Length = 1235

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 572 VNQTKKPDIKQRFPDMEDTNQNWGFATSNESDYDDGLDGK-RPISFDKIRPKDVIKRPAP 748
           +++T++ D  +   +++D N N     +N+ D+DDG DG       DK+       +P P
Sbjct: 683 LSETERNDRDEGDGEVDDDNHN-----NNDDDHDDGDDGSDNNEQRDKMGAAAAGDKPKP 737

Query: 749 PVE 757
           P E
Sbjct: 738 PAE 740


>AF011791-1|AAB69991.2| 1107|Drosophila melanogaster Bifocal
           protein.
          Length = 1107

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 572 VNQTKKPDIKQRFPDMEDTNQNWGFATSNESDYDDGLDGK-RPISFDKIRPKDVIKRPAP 748
           +++T++ D  +   +++D N N     +N+ D+DDG DG       DK+       +P P
Sbjct: 682 LSETERNDRDEGDGEVDDDNHN-----NNDDDHDDGDDGSDNNEQRDKMGAAAAGDKPKP 736

Query: 749 PVE 757
           P E
Sbjct: 737 PAE 739


>AE014298-1662|AAF48076.1| 1108|Drosophila melanogaster CG1822-PC,
           isoform C protein.
          Length = 1108

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 572 VNQTKKPDIKQRFPDMEDTNQNWGFATSNESDYDDGLDGK-RPISFDKIRPKDVIKRPAP 748
           +++T++ D  +   +++D N N     +N+ D+DDG DG       DK+       +P P
Sbjct: 683 LSETERNDRDEGDGEVDDDNHN-----NNDDDHDDGDDGSDNNEQRDKMGAAAAGDKPKP 737

Query: 749 PVE 757
           P E
Sbjct: 738 PAE 740


>AE014298-1661|AAN09639.1| 1235|Drosophila melanogaster CG1822-PB,
           isoform B protein.
          Length = 1235

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 572 VNQTKKPDIKQRFPDMEDTNQNWGFATSNESDYDDGLDGK-RPISFDKIRPKDVIKRPAP 748
           +++T++ D  +   +++D N N     +N+ D+DDG DG       DK+       +P P
Sbjct: 683 LSETERNDRDEGDGEVDDDNHN-----NNDDDHDDGDDGSDNNEQRDKMGAAAAGDKPKP 737

Query: 749 PVE 757
           P E
Sbjct: 738 PAE 740


>AE014297-3316|AAF56126.3| 2236|Drosophila melanogaster CG6768-PA
           protein.
          Length = 2236

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 635 NWGFATSNESDYDDGLDGKRPISFDKIRPKDVIKRPA 745
           +W F  +  + YD  LD K+ I F K+R  + + RPA
Sbjct: 366 DWPFVETRAAVYD--LDMKQEIGFSKLRDGNYLSRPA 400


>AB035512-1|BAB17608.1| 2220|Drosophila melanogaster DNA polymerase
           epsilon protein.
          Length = 2220

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 635 NWGFATSNESDYDDGLDGKRPISFDKIRPKDVIKRPA 745
           +W F  +  + YD  LD K+ I F K+R  + + RPA
Sbjct: 366 DWPFVETRAAVYD--LDMKQEIGFSKLRDGNYLSRPA 400


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,979,605
Number of Sequences: 53049
Number of extensions: 501953
Number of successful extensions: 1443
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)