Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F24
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   101   7e-23
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.62 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    25   5.8  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  101 bits (241), Expect = 7e-23
 Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
 Frame = +1

Query: 106 NATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECA 279
           N  K+T +  T  K      L + +RRYDRKQ G+GGQ+KP+F         +VLRLEC 
Sbjct: 16  NCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECV 75

Query: 280 DCKVRSQVALKRCKHFELGGDKKRKGQMIQF 372
            CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 76  SCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106



 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +3

Query: 60  MVXVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQG 170
           MV +PK R+TY              +QYKK  +   AQG
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQG 39


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 169 PWAACLSLDFLYCDTLCTLWHL 104
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +1

Query: 67  TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRR--YDRKQQGYGGQSKPIF 228
           TY+N +   A    +  Y   H      K   P+   R  +DR Q GY G + P +
Sbjct: 294 TYENESAVEA--TMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYY 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,544,473
Number of Sequences: 5004
Number of extensions: 27598
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)