Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F24
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)              111   4e-25
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)           62   2e-10
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_19712| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   4.7  
SB_59167| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_58275| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2)                 27   5.9  
SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_36336| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)               27   5.9  
SB_33769| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_8778| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_27396| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3)                 27   5.9  
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)                27   7.8  

>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
          Length = 113

 Score =  111 bits (266), Expect = 4e-25
 Identities = 51/96 (53%), Positives = 63/96 (65%)
 Frame = +1

Query: 85  GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 264
           G+  +     K T+Y   K+ +     + +RRYDRKQ G+GGQ+KP+F         IVL
Sbjct: 21  GKKCRRHTLHKVTQY---KTGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVL 77

Query: 265 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 372
           R+EC  CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 78  RMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113


>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
          Length = 39

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +1

Query: 256 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 354
           IVLR+EC  CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7   IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39


>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1442

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 268  LECADCKVRSQVALKRCKHFELG 336
            +EC +CK R  +A   C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135


>SB_19712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 25.4 bits (53), Expect(2) = 4.7
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
 Frame = +1

Query: 82  AGRTAKNVNATKYTRYHSTKSPRKG-----TLPRXRRRYDRKQQ 198
           AG T+KN ++++  R H  + P        T    R+R D K++
Sbjct: 29  AGMTSKNTSSSRKARMHQVEGPGNSRCCPETAETRRKRVDNKRR 72



 Score = 21.0 bits (42), Expect(2) = 4.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +1

Query: 265 RLECADCKVRSQVALKRCKHFELGGDKKRKGQM 363
           R  C  C++  ++ L++       GD   KG+M
Sbjct: 71  RRVCRLCRLSHRLVLRKKTLARTSGDSAGKGEM 103


>SB_59167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 31  C*YRAERTQKWXTYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGG 210
           C Y  +RT+K  +  N  G +  +    +  R       R+G + R  R  DR+Q     
Sbjct: 9   CGYEYDRTRKSMSSPNFRGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRDRQQSRRTA 68

Query: 211 QSKP 222
           +S P
Sbjct: 69  RSPP 72


>SB_58275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 31  C*YRAERTQKWXTYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGG 210
           C Y  +RT+K  +  N  G +  +    +  R       R+G + R  R  DR+Q     
Sbjct: 9   CGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRDRQQSRRTA 68

Query: 211 QSKP 222
           +S P
Sbjct: 69  RSPP 72


>SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2)
          Length = 196

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 31  C*YRAERTQKWXTYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGG 210
           C Y  +RT+K  +  N  G +  +    +  R       R+G + R  R  DR+Q     
Sbjct: 82  CGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRDRQQSRRTA 141

Query: 211 QSKP 222
           +S P
Sbjct: 142 RSPP 145


>SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 104

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 94  AKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKP 222
           A  V+  +Y    STK  RK    + +R+ D+K+Q  G    P
Sbjct: 59  AARVSLAQYKTKQSTKKQRKVLRGQKKRKDDQKKQAEGANYAP 101


>SB_36336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 31  C*YRAERTQKWXTYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGG 210
           C Y  +RT+K  +  N  G +  +    +  R       R+G + R  R  DR+Q     
Sbjct: 9   CGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRDRQQSRRTA 68

Query: 211 QSKP 222
           +S P
Sbjct: 69  RSPP 72


>SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)
          Length = 471

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 31  C*YRAERTQKWXTYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGG 210
           C Y  +RT+K  +  N  G +  +    +  R       R+G + R  R  DR+Q     
Sbjct: 120 CGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRDRQQSRRTA 179

Query: 211 QSKP 222
           +S P
Sbjct: 180 RSPP 183


>SB_33769| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 31  C*YRAERTQKWXTYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGG 210
           C Y  +RT+K  +  N  G +  +    +  R       R+G + R  R  DR+Q     
Sbjct: 9   CGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDRQRRGCIVRNHRPRDRQQSRRTA 68

Query: 211 QSKP 222
           +S P
Sbjct: 69  RSPP 72


>SB_8778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 31  C*YRAERTQKWXTYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGG 210
           C Y  +RT+K  +  N  G +  +    +  R       R+G + R  R  DR+Q     
Sbjct: 9   CGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDHQRRGCIVRNHRPRDRQQSRRTA 68

Query: 211 QSKP 222
           +S P
Sbjct: 69  RSPP 72


>SB_27396| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 31  C*YRAERTQKWXTYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGG 210
           C Y  +RT+K  +  N  G +  +    +  R       R+G + R  R  DR+Q     
Sbjct: 9   CGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDHQRRGCIVRNHRPRDRQQSRRTA 68

Query: 211 QSKP 222
           +S P
Sbjct: 69  RSPP 72


>SB_14500| Best HMM Match : Vicilin_N (HMM E-Value=5.3)
          Length = 237

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 31  C*YRAERTQKWXTYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGG 210
           C Y  +RT+K  +  N  G +  +    +  R       R+G + R  R  DR+Q     
Sbjct: 71  CGYEYDRTRKSMSSPNFQGPSRAHRTPQETGRMRPYDHQRRGCIVRNHRPRDRQQSRRTA 130

Query: 211 QSKP 222
           +S P
Sbjct: 131 RSPP 134


>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
          Length = 303

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 385 LEAFKIGSSVPFSSCHHQAQSACI 314
           +E + +G S+ +  C H   SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,282,423
Number of Sequences: 59808
Number of extensions: 234475
Number of successful extensions: 753
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)