Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F24
(471 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 103 9e-23
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 103 9e-23
Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical pr... 29 1.3
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 27 6.8
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical p... 27 9.0
Z22176-12|CAO82057.1| 546|Caenorhabditis elegans Hypothetical p... 27 9.0
Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical p... 27 9.0
Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical pr... 27 9.0
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 9.0
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 9.0
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 27 9.0
AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein. 27 9.0
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 103 bits (246), Expect = 9e-23
Identities = 49/96 (51%), Positives = 64/96 (66%)
Frame = +1
Query: 85 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 264
G+ K+ N K T+Y K ++ + RRRYDRKQ G+GGQ+KPIF IVL
Sbjct: 14 GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69
Query: 265 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 372
R+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 70 RMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 60 MVXVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 170
MV VPK RRT+ +QYKK KE AQG
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 103 bits (246), Expect = 9e-23
Identities = 49/96 (51%), Positives = 64/96 (66%)
Frame = +1
Query: 85 GRTAKNVNATKYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVL 264
G+ K+ N K T+Y K ++ + RRRYDRKQ G+GGQ+KPIF IVL
Sbjct: 14 GKCRKHTNH-KVTQY---KKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVL 69
Query: 265 RLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 372
R+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 70 RMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 60 MVXVPKQRRTY-XXXXXXXXXXXXSQYKKSKERHAAQG 170
MV VPK RRT+ +QYKK KE AQG
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQG 38
>Z75550-7|CAA99925.2| 195|Caenorhabditis elegans Hypothetical
protein T22C1.9 protein.
Length = 195
Score = 29.5 bits (63), Expect = 1.3
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 193 VYDHNVFXPWA-ACLSLDFLYCDTLCTLWHL 104
+YDH+ + W +S+ F++C C +W +
Sbjct: 27 IYDHHYYPMWFWIVISVGFVFCTLSCAVWFM 57
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 27.1 bits (57), Expect = 6.8
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +1
Query: 76 NSAGRTAKNVNATKYTRYHSTKSPRKGTLP---RXRRRYDRKQQGYGGQSKPI 225
+S A+N + T H T+S K +L R RRR + +Q Y S PI
Sbjct: 648 SSVAGNARNASGANITTIHVTES--KSSLKKSHRRRRRVAKSRQSYTAGSSPI 698
>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical
protein ZK897.1 protein.
Length = 1396
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 107 MPQSTQGITVQKVQGKARCPGXEDVMIVNS 196
+P +T+G TV K + K+R ED+ + NS
Sbjct: 442 VPVTTRGATVGKRKDKSRSRSIEDLSLFNS 471
>Z22176-13|CAO82058.1| 1185|Caenorhabditis elegans Hypothetical
protein ZK1098.10d protein.
Length = 1185
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -3
Query: 220 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTXTIFECVRH 41
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 848 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 906
>Z22176-12|CAO82057.1| 546|Caenorhabditis elegans Hypothetical
protein ZK1098.10c protein.
Length = 546
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -3
Query: 220 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTXTIFECVRH 41
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 209 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 267
>Z22176-10|CAD45611.1| 1157|Caenorhabditis elegans Hypothetical
protein ZK1098.10b protein.
Length = 1157
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -3
Query: 220 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTXTIFECVRH 41
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 820 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 878
>Z22176-9|CAA80140.1| 1139|Caenorhabditis elegans Hypothetical
protein ZK1098.10a protein.
Length = 1139
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -3
Query: 220 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTXTIFECVRH 41
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 802 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 860
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 148 LDFLYCDTLCTLWHLHFLQYVLRCFGTXTIFE 53
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 148 LDFLYCDTLCTLWHLHFLQYVLRCFGTXTIFE 53
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 262 LRLECADCKVRSQVALKRCKHFELGGDKK 348
+ +E A+CK R + + K+CK E ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180
>AF424978-1|AAL23934.1| 1157|Caenorhabditis elegans UNC-16 protein.
Length = 1157
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/60 (25%), Positives = 23/60 (38%)
Frame = -3
Query: 220 VWTDHRNPAVYDHNVFXPWAACLSLDFLYCDTLCTLWHLHFLQYVLRCFGTXTIFECVRH 41
VW +N +Y H+ W CL D + ++ H + GT IF +H
Sbjct: 820 VWMGGQNQYIYIHSAVTAWKQCLR-RIKMPDAVLSIVHYKSRIFAALANGTIAIFHRNKH 878
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,917,776
Number of Sequences: 27780
Number of extensions: 167181
Number of successful extensions: 551
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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