Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F22
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6553| Best HMM Match : Complex1_17_2kD (HMM E-Value=2.50006e-41) 137 9e-33
SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18) 31 0.86
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8) 31 1.1
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22) 30 1.5
SB_37337| Best HMM Match : PGI (HMM E-Value=0) 29 2.6
SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3) 29 2.6
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_59125| Best HMM Match : DUF1309 (HMM E-Value=4.2) 29 4.6
SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2) 28 6.0
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_6553| Best HMM Match : Complex1_17_2kD (HMM E-Value=2.50006e-41)
Length = 134
Score = 137 bits (331), Expect = 9e-33
Identities = 58/131 (44%), Positives = 83/131 (63%)
Frame = +3
Query: 84 KLSNFFNVIRQHGGISASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYS 263
K+ +++ GG+ + ++ R++ + GV VGEDKYGNKYYEN ++ + RNR+VEY
Sbjct: 3 KIQQSLKFVKEIGGVKGAFWRFMRENTARIGVFVGEDKYGNKYYENNKYLFGRNRFVEYP 62
Query: 264 DKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTT 443
+ Y +QVP EW WLH TD PP + P P K+ DH + +GT +YVPYSTT
Sbjct: 63 YAGRMEYHATQVPPEWHRWLHNMTDDPPSKVPPVPR-KFFLDHETSKTGTDEKYVPYSTT 121
Query: 444 RPKVEAWEPKR 476
RPK+E+W P +
Sbjct: 122 RPKIESWTPPK 132
>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
Length = 1076
Score = 31.1 bits (67), Expect = 0.86
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 5/111 (4%)
Frame = -1
Query: 390 GPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPSTRP--ICSCCKRNVGS 217
G + S +S D R C + Q + H ++S+ P +C C R
Sbjct: 653 GSGAQFSVGESITDPSGKRSC-LRKQGFNVKRIKHGATSSVTDVFEPKGVCCCSVRRGVQ 711
Query: 216 HSICYHICLLQLEHRPLHRPACIVYTTRRLYHRADELR*K---NCLACTRA 73
+IC +C +P+ C+ Y+ RRL +R +L K N CT A
Sbjct: 712 ITIC-KLCAGSSSSQPISHSDCVSYSGRRLGNRTVQLSKKWRANLYKCTDA 761
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 31.1 bits (67), Expect = 0.86
Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 1/124 (0%)
Frame = -2
Query: 629 HVQITLVSFINIIATFKKKLTDISVFDS*HLQKKVFYKINFSVNLFLNTVFAFRLPGFHF 450
H +++SF+ + + + + VF S F +NF + + + A P +H
Sbjct: 75 HCLFSVISFLRFLLSGRFRFGAFEVFVSSLDYLSSFSSVNFLAAVSVERLVAVAFPFYHR 134
Query: 449 GSGRTVRHILGGRARKIFGVVRHPLVVGTTRILMRRQIGFVV*PTKPFSGNL-TSIIVQV 273
+G+T +L G I + ++VG L+ +I + FS L S V
Sbjct: 135 ATGKTFYGVLIGTPWVIAAICTVTILVGVFTPLIPLKISVTLFLIYVFSPLLIMSAAYTV 194
Query: 272 ILVR 261
I++R
Sbjct: 195 IMIR 198
>SB_4869| Best HMM Match : Coprinus_mating (HMM E-Value=2.8)
Length = 796
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = -1
Query: 432 TAHIGRSCQKDFRCGP--PST-CSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNT 268
T H G S + C P P C+GDD+D D + +R V + ++ F+ S T
Sbjct: 122 TKHGGNSKNSEESCKPFDPHRHCNGDDNDSDDDDHRLHHVGEYSCSKKTSFNSSKFKT 179
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Frame = -1
Query: 477 CVSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPS--TCSGDDSDPDAEANRFCS----VAN 316
CV P + C + C +C P TCS + P+ C+ AN
Sbjct: 218 CVCKPGYEQALSGQCVPVCTQGCVNG-KCTSPDVCTCSFGWTGPNCSVECLCNGHGHCAN 276
Query: 315 QTIQRE--PDF-HHSSSNTCPSTRPICSCCKRNVGSHSICYHIC 193
T +R+ D +H++ ++C P+ RN GS CYH C
Sbjct: 277 AT-KRDVCTDCRNHTTGSSCQYCEPLYVGDARNNGSCVSCYHTC 319
>SB_11942| Best HMM Match : Ank (HMM E-Value=3.6e-22)
Length = 540
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = +3
Query: 180 LVGEDKYGNKYYENPRF------FYSRNRWVEYSDKYYLNYDGSQVPAEWFGWLHYKTDL 341
LVG D GNKYYE R R + + + Y P EW W+ K +
Sbjct: 17 LVGTDLDGNKYYEIVRSGSHAGDMSQRTKREVVTKLKHDQYTPGTNPIEWESWIRGKREE 76
Query: 342 PP-HQD 356
PP H++
Sbjct: 77 PPTHEE 82
>SB_37337| Best HMM Match : PGI (HMM E-Value=0)
Length = 391
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 375 KWMADHTENLSGTTAQYVPYSTTRPKV 455
KW+ DH ++ S +V ST PKV
Sbjct: 171 KWLLDHLKDKSAVAKHFVALSTNEPKV 197
>SB_36384| Best HMM Match : Keratin_B2 (HMM E-Value=2.3)
Length = 199
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = -1
Query: 516 DKF*REFIFKHCLCVSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPS 379
DK+ R+ IF+ + +P +P WVG+ C + + + ++ +RC PS
Sbjct: 129 DKWGRK-IFRDTVLSWSPMIPCWVGTPCKS-VVQHIRRKYRCLGPS 172
>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +3
Query: 327 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRK 479
YK+ PPH+ PH + H + P+ + +P ++++P K
Sbjct: 423 YKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPHK 473
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +3
Query: 327 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEPKRK 479
+K+ PPH+ PH + H + PY + +P ++++P K
Sbjct: 444 HKSYQPPHKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQPPYKSYQPPYK 494
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/48 (22%), Positives = 22/48 (45%)
Frame = +3
Query: 327 YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVEAWEP 470
+K+ PPH+ PH + H + PY + +P ++++P
Sbjct: 451 HKSYQPPHKSYQPPHKSYQPPHKSYQPPYKSYQPPYKSYQPPYKSYQP 498
>SB_59125| Best HMM Match : DUF1309 (HMM E-Value=4.2)
Length = 187
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -1
Query: 498 FIFKHCLCVSAPRLPL 451
F+ KH LC+SAP LPL
Sbjct: 96 FLNKHYLCISAPALPL 111
>SB_32268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 189 EDKYGNKYYENPRFFYSRNRWVEYSDKYY 275
++KYG++ YE+ + Y + EY DK Y
Sbjct: 6 DEKYGDEEYEDKEYEYEKYGDEEYEDKKY 34
>SB_18522| Best HMM Match : DUF960 (HMM E-Value=8.2)
Length = 368
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = -1
Query: 189 LQLEHRPLHRPACIVYTTRRLYHRADELR*KNCLACTR 76
L L HR LH P C T R LYH +CLA R
Sbjct: 49 LSLIHR-LHPPQCWATTRRMLYHSLFTYSSLHCLAKVR 85
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 333 TDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTR 446
TD+PP DPS P K + H S ++A PY T+
Sbjct: 2960 TDIPPLLDPSLPSPKLSSSH---FSRSSANSYPYPLTQ 2994
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,254,027
Number of Sequences: 59808
Number of extensions: 536422
Number of successful extensions: 1481
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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