Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F22
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024876-8|AAF60889.1|  187|Caenorhabditis elegans Hypothetical ...   140   6e-34
AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical ...    31   1.00 
AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z81510-5|CAB04165.1|  188|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U88182-5|AAB42306.1|  237|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AY241927-1|AAO85276.1|  330|Caenorhabditis elegans beta-1,3-gala...    28   7.0  
AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC024746-16|AAF60408.1|  330|Caenorhabditis elegans Squashed vul...    28   7.0  
AC006833-11|AAU87801.1|  175|Caenorhabditis elegans Enhancer of ...    28   7.0  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z67884-1|CAA91807.1|  347|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z35598-7|CAA84650.2|  325|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    27   9.3  
L14745-4|AAA27921.1|  419|Caenorhabditis elegans Hypothetical pr...    27   9.3  
L14745-3|AAM15539.1|  450|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AC024876-8|AAF60889.1|  187|Caenorhabditis elegans Hypothetical
           protein Y94H6A.8 protein.
          Length = 187

 Score =  140 bits (340), Expect = 6e-34
 Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 1/133 (0%)
 Frame = +3

Query: 84  KLSNFFNVIRQHGGISASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRFFYSRNRWVEYS 263
           K+  F  ++++ GG+ A L K Y  D  + G LVG D +GN+YYEN  +F  RNRWVE+ 
Sbjct: 52  KIQKFGQMVKEIGGVKAVLKKRYLMDATRVGTLVGSDNFGNRYYENNAYFVPRNRWVEFP 111

Query: 264 DKYYLNYDGSQVPAEWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLS-GTTAQYVPYST 440
           DK +L+YD +QVP EW  WLH+ TD  P   P  P   W+ +H EN S     +YVPYST
Sbjct: 112 DKVWLDYDATQVPPEWHSWLHHITDDAPSVKPP-PTQDWVLEHKENTSIYADKKYVPYST 170

Query: 441 TRPKVEAWEPKRK 479
           TR K++ W+P  K
Sbjct: 171 TRTKIQGWQPGEK 183


>AF100656-7|AAF99964.2|  615|Caenorhabditis elegans Hypothetical
           protein F49F1.8 protein.
          Length = 615

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -1

Query: 396 RCGPPSTCSGDDSDPDAEANRFCSVANQTIQREPD---FHHSSSNTCPSTRPICSCCKRN 226
           RC   S C  + SD D+++      A  TI+  P+    H  S N     + +C CCK +
Sbjct: 397 RCHQDSECRVESSDSDSDSLNQDEHAVHTIEENPNTKSSHPKSEN--QRFQDVCQCCK-S 453

Query: 225 VGSHS 211
           VG  S
Sbjct: 454 VGHKS 458


>AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical
           protein Y6D1A.1 protein.
          Length = 681

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 474 VSAPRLPLWVGSYCTAHIGRSCQKDFRCGPPSTCSG-DDSDPDAEANRFCSVANQTIQRE 298
           V+  R  L +   CT  +GR   KD R    + C    D DP+ E + +   A  T  +E
Sbjct: 285 VNNRRKALIMAGRCTRCLGRHSFKDCRSAKFNVCMYCKDEDPNVELHNYGLCAKPTPSQE 344

Query: 297 PD 292
           P+
Sbjct: 345 PE 346


>Z81510-5|CAB04165.1|  188|Caenorhabditis elegans Hypothetical
           protein F21D9.8 protein.
          Length = 188

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/50 (30%), Positives = 18/50 (36%)
 Frame = -1

Query: 348 AEANRFCSVANQTIQREPDFHHSSSNTCPSTRPICSCCKRNVGSHSICYH 199
           AEA   C         + D+HH     CP  +  CS C  N       YH
Sbjct: 117 AEALSMCKHCLTVGVTDDDWHHEG---CPKAKDTCSVCANNTNRVGCKYH 163


>U88182-5|AAB42306.1|  237|Caenorhabditis elegans Hypothetical
           protein C53C11.1 protein.
          Length = 237

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 148 SLYNEALIPPC*RITLKKLLSLYEGXKLXQRHFCGDYGS 32
           S+Y+E LIPP  R+   ++    E  ++  R+F  D GS
Sbjct: 111 SMYDEPLIPPACRLEYPRVYLTPEQRRIPGRYFTPDDGS 149


>AY241927-1|AAO85276.1|  330|Caenorhabditis elegans
           beta-1,3-galactosyltransferase protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 126 ISASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRF 230
           I+A L++ YR +DV  G  +G      KY  +PRF
Sbjct: 229 INAQLFRHYRNEDVSVGAWIG--GLDVKYVHDPRF 261


>AL033536-1|CAA22138.1|  908|Caenorhabditis elegans Hypothetical
           protein Y53C10A.4 protein.
          Length = 908

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = -1

Query: 393 CGPPSTCSGDDSDPDAEANRFCSVANQTIQREPDFHHSSSNTCPSTRP 250
           CG P   S DDSD    A +  SVA  T   EP    SSS++  S+ P
Sbjct: 673 CGLPHISSNDDSDSRFPAFKSSSVAMLT---EPYKSSSSSSSSTSSIP 717


>AC024746-16|AAF60408.1|  330|Caenorhabditis elegans Squashed vulva
           protein 2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 126 ISASLYKLYRQDDVKDGVLVGEDKYGNKYYENPRF 230
           I+A L++ YR +DV  G  +G      KY  +PRF
Sbjct: 229 INAQLFRHYRNEDVSVGAWIG--GLDVKYVHDPRF 261


>AC006833-11|AAU87801.1|  175|Caenorhabditis elegans Enhancer of
           hand mutation hnd-1protein 3, isoform c protein.
          Length = 175

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -1

Query: 291 FHHSSSNTCPSTRPI-C-SCCKRNVGSHSICYHICLLQLEHRPLH 163
           FH  S +    + P  C SC K    SH +  H     L+H PLH
Sbjct: 34  FHVDSEHIIRGSSPAKCKSCIKWFNSSHRLLLHFHTAHLDHTPLH 78


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = -1

Query: 315 QTIQREP-DFHHSSSNTCPSTRPICSCCKRNVGSHSICYHICLLQLEHRPLHRP 157
           ++ Q++P  F    S  CP  +P C+C   N  +  I   I   Q +      P
Sbjct: 163 RSAQQQPLRFSQYPSCPCPQNQPACTCSTNNQQNEQILVSISCCQQQETTTQAP 216


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 292 VRFPLNGLVGYTTKPICLRIRIRVVPTTSGW 384
           + FP NG   +   PI   I +RV  T  GW
Sbjct: 171 IMFPGNGFCSHVAYPIYGSIMLRVTDTMFGW 201


>Z72502-8|CAD44097.1|  374|Caenorhabditis elegans Hypothetical
           protein C08B6.11 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 678 FFNEFQIFIQLST*KLTCTNYFSFIYKY 595
           F++E +   + S  +L C NY+  + KY
Sbjct: 75  FYDELETIAEKSETRLNCLNYYKMVQKY 102


>Z67884-1|CAA91807.1|  347|Caenorhabditis elegans Hypothetical
           protein T14G8.2 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 216 ENPRFFYSRNRWVEYSDKYYLNY--DGSQVPAEWFGWLHYKT 335
           +NP  + S    V  ++K+ +N+  D SQ+  + F WL YKT
Sbjct: 32  DNPLLYNSIREHVN-TEKFTVNFYTDQSQLKIKGFTWLFYKT 72


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
           protein D2085.1 protein.
          Length = 2198

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 195 KYGNKYYENPRFFYSRNRWVEYSDKYYLNYDGSQVPAEW 311
           KYGN+ +  P   Y+  R    S  +    D   +PA+W
Sbjct: 273 KYGNRGHNQPCTHYATGRCYITSQNHGYAVDPDSLPADW 311


>Z35598-7|CAA84650.2|  325|Caenorhabditis elegans Hypothetical
           protein F10F2.3 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 492 FKHCLCVSAPRLPLWVGSYCTAHIGRSCQKDFRCG 388
           F  C+C  A  +P W  +    + G +CQ    CG
Sbjct: 203 FGLCVCQLAQTVPAWCNALDGLYPGYTCQDQLWCG 237


>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
            B0496.3a protein.
          Length = 1551

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 327  YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVE 458
            Y+T       P  P  ++ A  T +  G +  Y P+ TTRP  +
Sbjct: 1114 YRTHRDSDYRPMSPTSRYTAAVTRDDRGKSTSYDPHETTRPSYD 1157


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
            B0496.3b protein.
          Length = 1592

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 327  YKTDLPPHQDPSRPHYKWMADHTENLSGTTAQYVPYSTTRPKVE 458
            Y+T       P  P  ++ A  T +  G +  Y P+ TTRP  +
Sbjct: 1155 YRTHRDSDYRPMSPTSRYTAAVTRDDRGKSTSYDPHETTRPSYD 1198


>L14745-4|AAA27921.1|  419|Caenorhabditis elegans Hypothetical
           protein C02F5.6a protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 306 EWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTT 416
           E+  WL   +   PH     PHY  M    ENLSG +
Sbjct: 276 EFSNWLEELSIRFPHYQIDPPHYIGMTRGYENLSGAS 312


>L14745-3|AAM15539.1|  450|Caenorhabditis elegans Hypothetical
           protein C02F5.6b protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 306 EWFGWLHYKTDLPPHQDPSRPHYKWMADHTENLSGTT 416
           E+  WL   +   PH     PHY  M    ENLSG +
Sbjct: 276 EFSNWLEELSIRFPHYQIDPPHYIGMTRGYENLSGAS 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,697,825
Number of Sequences: 27780
Number of extensions: 404615
Number of successful extensions: 1094
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)