Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F21
(594 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5; Endoptery... 112 5e-24
UniRef50_Q170L8 Cluster: Ornithine decarboxylase; n=1; Aedes aeg... 43 0.006
UniRef50_Q170L5 Cluster: Ornithine decarboxylase; n=4; Culicidae... 41 0.025
UniRef50_UPI0000F2D440 Cluster: PREDICTED: similar to Pla2g4c pr... 39 0.10
UniRef50_Q70MP4 Cluster: Ornithine decarboxylase; n=1; Crassostr... 38 0.13
UniRef50_A7PEV7 Cluster: Chromosome chr11 scaffold_13, whole gen... 38 0.18
UniRef50_UPI00005A03C2 Cluster: PREDICTED: hypothetical protein ... 38 0.23
UniRef50_O22616 Cluster: Ornithine decarboxylase; n=24; Magnolio... 38 0.23
UniRef50_UPI00015B5F2B Cluster: PREDICTED: similar to ENSANGP000... 37 0.31
UniRef50_Q9UUQ7 Cluster: Ornithine decarboxylase; n=1; Mucor cir... 37 0.31
UniRef50_Q0C732 Cluster: Ornithine decarboxylase; n=3; Aedes aeg... 37 0.41
UniRef50_P27116 Cluster: Ornithine decarboxylase; n=6; Trypanoso... 36 0.54
UniRef50_A1CVN2 Cluster: Ornithine decarboxylase; n=6; Pezizomyc... 36 0.95
UniRef50_UPI0000E25800 Cluster: PREDICTED: similar to Transcript... 35 1.3
UniRef50_Q4SAD4 Cluster: Chromosome 19 SCAF14691, whole genome s... 35 1.3
UniRef50_P78599 Cluster: Ornithine decarboxylase; n=4; Saccharom... 35 1.7
UniRef50_A5NMZ6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.2
UniRef50_P27121 Cluster: Ornithine decarboxylase; n=9; Eukaryota... 34 2.2
UniRef50_UPI0000F2C16A Cluster: PREDICTED: hypothetical protein;... 34 2.9
UniRef50_Q7S888 Cluster: Predicted protein; n=1; Neurospora cras... 34 2.9
UniRef50_UPI000155F5F1 Cluster: PREDICTED: hypothetical protein;... 33 3.8
UniRef50_UPI000155E4F1 Cluster: PREDICTED: similar to alpha3 typ... 33 3.8
UniRef50_P11926 Cluster: Ornithine decarboxylase; n=306; Eukaryo... 33 5.0
UniRef50_Q5TZA2 Cluster: Rootletin; n=40; Amniota|Rep: Rootletin... 33 5.0
UniRef50_A6G668 Cluster: ABC transporter related protein; n=1; P... 33 6.7
UniRef50_Q7F942 Cluster: OSJNBa0095E20.1 protein; n=2; Oryza sat... 33 6.7
UniRef50_A5NRT3 Cluster: Putative uncharacterized protein; n=1; ... 32 8.8
UniRef50_O97406 Cluster: Collagen pro alpha-chain precursor; n=1... 32 8.8
UniRef50_O01579 Cluster: Putative uncharacterized protein; n=3; ... 32 8.8
UniRef50_Q2UF23 Cluster: Ornithine decarboxylase; n=1; Aspergill... 32 8.8
UniRef50_Q2QGD7 Cluster: Zinc finger protein ZXDC; n=48; Eumetaz... 32 8.8
UniRef50_P18835 Cluster: Cuticle collagen 19 precursor; n=9; Rha... 32 8.8
>UniRef50_Q1HPR3 Cluster: Ornithine decarboxylase; n=5;
Endopterygota|Rep: Ornithine decarboxylase - Bombyx mori
(Silk moth)
Length = 444
Score = 112 bits (270), Expect = 5e-24
Identities = 53/55 (96%), Positives = 53/55 (96%)
Frame = +3
Query: 429 MKVVEEQRIXVMEGSWSPVSVIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
MKVVEEQRI VMEGSWSPVSVIREIVESGVQEDPFYVMDLGEVVARY QWKELLP
Sbjct: 1 MKVVEEQRIRVMEGSWSPVSVIREIVESGVQEDPFYVMDLGEVVARYQQWKELLP 55
>UniRef50_Q170L8 Cluster: Ornithine decarboxylase; n=1; Aedes
aegypti|Rep: Ornithine decarboxylase - Aedes aegypti
(Yellowfever mosquito)
Length = 416
Score = 42.7 bits (96), Expect = 0.006
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 450 RIXVMEGSWSPVSVIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
R ++EG +S + IV G Q+ P ++++L +VVA++ W+E LP
Sbjct: 5 RYNLVEGEFSLDDAVHSIVARGPQDSPVHILNLDDVVAKHRNWREKLP 52
>UniRef50_Q170L5 Cluster: Ornithine decarboxylase; n=4;
Culicidae|Rep: Ornithine decarboxylase - Aedes aegypti
(Yellowfever mosquito)
Length = 432
Score = 40.7 bits (91), Expect = 0.025
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +3
Query: 459 VMEGSWSPVSVIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
+++ S V+ E+++S V+EDPF+V+DL +VV ++ W +P
Sbjct: 14 LLQSKGSVRQVVDELLKSPVREDPFHVLDLDDVVQKHLTWLRQMP 58
>UniRef50_UPI0000F2D440 Cluster: PREDICTED: similar to Pla2g4c
protein; n=2; Monodelphis domestica|Rep: PREDICTED:
similar to Pla2g4c protein - Monodelphis domestica
Length = 629
Score = 38.7 bits (86), Expect = 0.10
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 420 DNTMKVVEEQRIXVMEGSWSPVSVIREIVESGVQEDPFYVMDLGEVVARYXQWKELL 590
D+ + EE ++ + EGSW+P + ++ I E+ + + F + D+ + Y KELL
Sbjct: 157 DHLAEAEEELKVRLQEGSWNPGTALKGIQEAARRSENFSLTDIWQYTLVYYMTKELL 213
>UniRef50_Q70MP4 Cluster: Ornithine decarboxylase; n=1; Crassostrea
gigas|Rep: Ornithine decarboxylase - Crassostrea gigas
(Pacific oyster) (Crassostrea angulata)
Length = 186
Score = 38.3 bits (85), Expect = 0.13
Identities = 13/26 (50%), Positives = 21/26 (80%)
Frame = +3
Query: 516 VQEDPFYVMDLGEVVARYXQWKELLP 593
V+E+ F++ DLG+++A+Y WKE LP
Sbjct: 35 VKEEAFFIGDLGDIIAKYQVWKETLP 60
>UniRef50_A7PEV7 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 496
Score = 37.9 bits (84), Expect = 0.18
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 486 SVIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
++IR I + +PFY++DLG VV WK+ LP
Sbjct: 115 ALIRSISQKQKDREPFYILDLGAVVRLMDMWKQALP 150
>UniRef50_UPI00005A03C2 Cluster: PREDICTED: hypothetical protein
XP_856358; n=1; Canis lupus familiaris|Rep: PREDICTED:
hypothetical protein XP_856358 - Canis familiaris
Length = 315
Score = 37.5 bits (83), Expect = 0.23
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 43 TKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSPRCWRR 183
+ +P ++ L WL + GE GA GS G +G P P PR WRR
Sbjct: 103 SSLPARSKGLTGSWLTMRLVGEQGARGSQGTSG--VLP-PGPRVWRR 146
>UniRef50_O22616 Cluster: Ornithine decarboxylase; n=24;
Magnoliophyta|Rep: Ornithine decarboxylase - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum)
Length = 431
Score = 37.5 bits (83), Expect = 0.23
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +3
Query: 501 IVESGVQED--PFYVMDLGEVVARYXQWKELLP 593
I+ +Q+D PFYV+DLGEVV+ QW LP
Sbjct: 53 IITQKLQDDKQPFYVLDLGEVVSLMEQWNSALP 85
>UniRef50_UPI00015B5F2B Cluster: PREDICTED: similar to
ENSANGP00000020224; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000020224 - Nasonia
vitripennis
Length = 475
Score = 37.1 bits (82), Expect = 0.31
Identities = 12/47 (25%), Positives = 29/47 (61%)
Frame = +3
Query: 453 IXVMEGSWSPVSVIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
+ + + + ++R+I+ EDPF+++D+G++V ++ W E +P
Sbjct: 13 VRIFDDKLDDLEIMRKIIALENLEDPFHLLDVGDLVRKHRTWVERIP 59
>UniRef50_Q9UUQ7 Cluster: Ornithine decarboxylase; n=1; Mucor
circinelloides f. lusitanicus|Rep: Ornithine
decarboxylase - Mucor circinelloides f. lusitanicus
Length = 433
Score = 37.1 bits (82), Expect = 0.31
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +3
Query: 519 QEDPFYVMDLGEVVARYXQWKELLP 593
QE+ F+V DLGEVV ++ +WK LLP
Sbjct: 56 QENAFFVGDLGEVVRQHIRWKSLLP 80
>UniRef50_Q0C732 Cluster: Ornithine decarboxylase; n=3; Aedes
aegypti|Rep: Ornithine decarboxylase - Aedes aegypti
(Yellowfever mosquito)
Length = 437
Score = 36.7 bits (81), Expect = 0.41
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +3
Query: 438 VEEQRIXVMEGSWSPVSVIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
V + R+ +++ S S ++ +V G QE+P ++ ++ +V R+ +W + LP
Sbjct: 6 VLKNRVEIVDDSVSSRDLVNRLVTQGPQEEPLHLTEVDTLVKRHYEWLQHLP 57
>UniRef50_P27116 Cluster: Ornithine decarboxylase; n=6;
Trypanosomatidae|Rep: Ornithine decarboxylase -
Leishmania donovani
Length = 707
Score = 36.3 bits (80), Expect = 0.54
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +3
Query: 522 EDPFYVMDLGEVVARYXQWKELLP 593
EDPFY++DLG VV + +W+ LP
Sbjct: 256 EDPFYIIDLGRVVEQMARWRHELP 279
>UniRef50_A1CVN2 Cluster: Ornithine decarboxylase; n=6;
Pezizomycotina|Rep: Ornithine decarboxylase -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 443
Score = 35.5 bits (78), Expect = 0.95
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +3
Query: 507 ESGVQEDPFYVMDLGEVVARYXQWKELLP 593
E G+ ++PF+V DLG+++ ++ +W+ LP
Sbjct: 42 EFGITDEPFFVADLGQILRQHRRWQSNLP 70
>UniRef50_UPI0000E25800 Cluster: PREDICTED: similar to Transcription
factor COE4 (Early B-cell factor 4) (EBF-4)
(Olf-1/EBF-like 4) (OE-4) (O/E-4), partial; n=1; Pan
troglodytes|Rep: PREDICTED: similar to Transcription
factor COE4 (Early B-cell factor 4) (EBF-4)
(Olf-1/EBF-like 4) (OE-4) (O/E-4), partial - Pan
troglodytes
Length = 355
Score = 35.1 bits (77), Expect = 1.3
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 100 PGESGACGSAGRNGRTARPRPSPRCW-RRALNVDP 201
P G G RNG RPRPS R W A+ VDP
Sbjct: 263 PAREGRSGDGERNGTQPRPRPSQRGWGAGAVRVDP 297
>UniRef50_Q4SAD4 Cluster: Chromosome 19 SCAF14691, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 19 SCAF14691, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1400
Score = 35.1 bits (77), Expect = 1.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +3
Query: 180 TSPQRRPALAAPCQGPLTP 236
TSP RRP+L PC+GPL+P
Sbjct: 886 TSPVRRPSLLMPCEGPLSP 904
>UniRef50_P78599 Cluster: Ornithine decarboxylase; n=4;
Saccharomycetales|Rep: Ornithine decarboxylase - Candida
albicans (Yeast)
Length = 473
Score = 34.7 bits (76), Expect = 1.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 522 EDPFYVMDLGEVVARYXQWKELLP 593
ED F+V DLGE++ QW+++LP
Sbjct: 74 EDSFFVCDLGEIINSVNQWQQILP 97
>UniRef50_A5NMZ6 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 198
Score = 34.3 bits (75), Expect = 2.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -1
Query: 297 GAWSWGPXSASPQVSGECGEVASAGPGTAQPGR 199
G +SWG A+P G V++ GPG A GR
Sbjct: 34 GRFSWGARKATPAAKGPADGVSACGPGNAGAGR 66
>UniRef50_P27121 Cluster: Ornithine decarboxylase; n=9;
Eukaryota|Rep: Ornithine decarboxylase - Neurospora
crassa
Length = 484
Score = 34.3 bits (75), Expect = 2.2
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 486 SVIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
S+ E E G ED F+V DLGEV ++ +WK LP
Sbjct: 71 SIDSEFCEPG-DEDTFFVADLGEVYRQHLRWKLNLP 105
>UniRef50_UPI0000F2C16A Cluster: PREDICTED: hypothetical protein;
n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
protein - Monodelphis domestica
Length = 166
Score = 33.9 bits (74), Expect = 2.9
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 197 TRPG--CAVPGPADATSPHSPDTCGLALXGPQDQAP 298
+RPG C P PA ++ P +P + G +L GP AP
Sbjct: 23 SRPGLPCLPPDPASSSQPPTPGSSGSSLQGPDSPAP 58
>UniRef50_Q7S888 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 1001
Score = 33.9 bits (74), Expect = 2.9
Identities = 17/62 (27%), Positives = 24/62 (38%)
Frame = +2
Query: 119 VAVPGGTDAQXXXXXXXXXXDEPST*TRPGCAVPGPADATSPHSPDTCGLALXGPQDQAP 298
V P T Q P+T T P A+P PA + + T G++ G +
Sbjct: 186 VRTPSRTRLQTTAAAAASAATTPTTPTAPTAAIPAPASTPALRTASTSGVSSAGKGRKGK 245
Query: 299 TT 304
TT
Sbjct: 246 TT 247
>UniRef50_UPI000155F5F1 Cluster: PREDICTED: hypothetical protein;
n=1; Equus caballus|Rep: PREDICTED: hypothetical protein
- Equus caballus
Length = 846
Score = 33.5 bits (73), Expect = 3.8
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = -3
Query: 511 LSTISRITLTGDHDPSITXMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVPFPCNV 332
+ST ++ L PS RC + + S+ +W C L R G P S P+P
Sbjct: 378 ISTWKKMYLKNPTPPSSISXRCXAVSARPXSSSSWAC-PPLGRTTSGTGPSSASPWPSVS 436
Query: 331 SAVRVSGVKCRRSLV 287
S + RSL+
Sbjct: 437 SGEHWVSLSXLRSLI 451
>UniRef50_UPI000155E4F1 Cluster: PREDICTED: similar to alpha3 type
IV collagen; n=1; Equus caballus|Rep: PREDICTED: similar
to alpha3 type IV collagen - Equus caballus
Length = 1658
Score = 33.5 bits (73), Expect = 3.8
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = +1
Query: 52 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRP 162
PP + P LG PGE GA G G G T P P
Sbjct: 856 PPGQKGYPGNPGFLGPPGEKGAVGMMGSPGFTGPPGP 892
>UniRef50_P11926 Cluster: Ornithine decarboxylase; n=306;
Eukaryota|Rep: Ornithine decarboxylase - Homo sapiens
(Human)
Length = 461
Score = 33.1 bits (72), Expect = 5.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 504 VESGVQEDPFYVMDLGEVVARYXQWKELLP 593
V S +D FYV DLG+++ ++ +W + LP
Sbjct: 31 VSSSDDKDAFYVADLGDILKKHLRWLKALP 60
>UniRef50_Q5TZA2 Cluster: Rootletin; n=40; Amniota|Rep: Rootletin -
Homo sapiens (Human)
Length = 2017
Score = 33.1 bits (72), Expect = 5.0
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +2
Query: 107 SPARVAVPGGTDAQXXXXXXXXXXDEPST*T-RPGCAVPGPADATSPHSPDTCGLALXG 280
SPA VPG + PST PG P P ATSP SPD A+ G
Sbjct: 1451 SPAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPDLDPEAVRG 1509
>UniRef50_A6G668 Cluster: ABC transporter related protein; n=1;
Plesiocystis pacifica SIR-1|Rep: ABC transporter related
protein - Plesiocystis pacifica SIR-1
Length = 613
Score = 32.7 bits (71), Expect = 6.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -2
Query: 122 PHAPDSPGAPKISHPLGRLSVDG 54
P DSPGA +S P GRLS DG
Sbjct: 339 PEIADSPGAQALSQPKGRLSFDG 361
>UniRef50_Q7F942 Cluster: OSJNBa0095E20.1 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: OSJNBa0095E20.1 protein -
Oryza sativa subsp. japonica (Rice)
Length = 301
Score = 32.7 bits (71), Expect = 6.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 489 VIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
+I +IV S F+V+DL +VV Y W+ LP
Sbjct: 38 LIHDIVASSSARSAFHVLDLAKVVDLYAGWRRALP 72
>UniRef50_A5NRT3 Cluster: Putative uncharacterized protein; n=1;
Methylobacterium sp. 4-46|Rep: Putative uncharacterized
protein - Methylobacterium sp. 4-46
Length = 144
Score = 32.3 bits (70), Expect = 8.8
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +1
Query: 112 GACGSAGRNGRTARPRPSPRCWR 180
G C SA R R RPRPSPR R
Sbjct: 104 GKCSSASRGRRCRRPRPSPRTCR 126
>UniRef50_O97406 Cluster: Collagen pro alpha-chain precursor; n=1;
Haliotis discus|Rep: Collagen pro alpha-chain precursor
- Haliotis discus (Abalone)
Length = 1439
Score = 32.3 bits (70), Expect = 8.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRTARPRPS 165
G PGE+GA G AG +G++ P PS
Sbjct: 513 GPPGEAGAVGPAGPDGKSGPPGPS 536
>UniRef50_O01579 Cluster: Putative uncharacterized protein; n=3;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 477
Score = 32.3 bits (70), Expect = 8.8
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +3
Query: 444 EQRIXVMEGSW-SPVSVIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
EQ I V+ G++ +P+ + R + PF+VMD+ + R + +LP
Sbjct: 27 EQSIAVLSGAYRNPIEMARHVAARCGSYQPFFVMDVAAIERRLEALRVMLP 77
>UniRef50_Q2UF23 Cluster: Ornithine decarboxylase; n=1; Aspergillus
oryzae|Rep: Ornithine decarboxylase - Aspergillus oryzae
Length = 425
Score = 32.3 bits (70), Expect = 8.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 519 QEDPFYVMDLGEVVARYXQWKELLP 593
+ +PF VMDLG V Y +W LLP
Sbjct: 49 RSEPFCVMDLGYVYNEYQRWTSLLP 73
>UniRef50_Q2QGD7 Cluster: Zinc finger protein ZXDC; n=48;
Eumetazoa|Rep: Zinc finger protein ZXDC - Homo sapiens
(Human)
Length = 858
Score = 32.3 bits (70), Expect = 8.8
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Frame = -1
Query: 345 FLVTFQLS-GLAVSSVVGAWSWGPXS----ASPQVSGECGEVASAGPGTAQPGRVYVEXX 181
FLV ++ G A + G+ P S AS G G A+ GPG A G V +
Sbjct: 75 FLVLLEVPHGGAAAEAAGSQEAEPGSRVNLASRPEQGPSGPAAAPGPGVAPAGAVTISSQ 134
Query: 180 XXXXXXXXXXGCASVPPGTAT 118
S PPG AT
Sbjct: 135 DLLVRLDRGVLALSAPPGPAT 155
>UniRef50_P18835 Cluster: Cuticle collagen 19 precursor; n=9;
Rhabditida|Rep: Cuticle collagen 19 precursor -
Caenorhabditis elegans
Length = 289
Score = 32.3 bits (70), Expect = 8.8
Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGRTARPRPS-PR 171
+G PGE G G AGR G RP P+ PR
Sbjct: 176 VGGPGEQGPQGDAGRPGAAGRPGPAGPR 203
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,750,675
Number of Sequences: 1657284
Number of extensions: 13408734
Number of successful extensions: 49334
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 42951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49152
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41488046300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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