Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F21
(594 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0200 + 2400929-2402161 32 0.30
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165... 31 0.92
01_05_0175 - 18936752-18937621,18938855-18941641 31 0.92
09_06_0142 - 21107878-21109104 30 1.6
02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608 29 2.8
06_01_0170 - 1352865-1353422,1355049-1355327 29 3.7
04_03_1022 - 21778315-21779007 28 4.9
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584 28 6.5
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754 28 6.5
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 28 6.5
09_02_0543 + 10427321-10428315,10428440-10429154 27 8.5
08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054... 27 8.5
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 27 8.5
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484... 27 8.5
06_03_1105 - 27634787-27636025 27 8.5
05_05_0120 + 22520285-22520569 27 8.5
05_05_0004 - 21422483-21422785,21423354-21423938,21424746-214248... 27 8.5
>04_01_0200 + 2400929-2402161
Length = 410
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 489 VIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
+I +IV S F+V+DL +VV Y W+ LP
Sbjct: 38 LIHDIVASSSARSAFHVLDLAKVVDLYAGWRRALP 72
>12_02_0996 -
25115643-25115708,25115869-25116107,25116484-25116577,
25116726-25116864,25116960-25117081,25117261-25117491,
25117583-25117644,25118335-25118461,25118890-25119183,
25119266-25119622
Length = 576
Score = 30.7 bits (66), Expect = 0.92
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 46 KIPPSTESLPSGWLILGAPGESGACGSAGRNG-RTARPRPSPR 171
+ P ST L + A SG G +G RTARP P+PR
Sbjct: 14 RCPRSTAVLAASRFAASASSSSGGGGGGSSSGARTARPPPAPR 56
>01_05_0175 - 18936752-18937621,18938855-18941641
Length = 1218
Score = 30.7 bits (66), Expect = 0.92
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 117 VWQCRAERTHSPP-XXXXXXXXTSPQRRPALAAPCQGPLTPPH 242
VW+CR + + +PP T+P A AAP + PPH
Sbjct: 57 VWRCRVKTSWTPPDSYPDFALPTAPASASAAAAPPRYDRVPPH 99
>09_06_0142 - 21107878-21109104
Length = 408
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 486 SVIREIVESGVQEDPFYVMDLGEVVARYXQWKELLP 593
++IR+IV G + F+V DL +VV + W+ LP
Sbjct: 32 ALIRDIVAGGARS-AFHVFDLAKVVDLHRGWRRALP 66
>02_02_0012 - 6092081-6092170,6092282-6092369,6093659-6094608
Length = 375
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -1
Query: 330 QLSGLAVSSVVGAWSWGPXSASPQVSGECGEVASAGPGTAQPGRVYV 190
+ +G A + AW+WGP G C A P A +Y+
Sbjct: 185 RFAGSAEAFDPAAWAWGPVQERVLDEGTCPRTCCAAPAPAAGATMYM 231
>06_01_0170 - 1352865-1353422,1355049-1355327
Length = 278
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 112 GACGSAGRNGRTARPRPSPR 171
G GSAGR+GR PR +PR
Sbjct: 208 GVDGSAGRSGRRGPPRAAPR 227
>04_03_1022 - 21778315-21779007
Length = 230
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +3
Query: 186 PQRRPALAAPCQGPLTPPHHIH 251
P PA AP GP PPHH H
Sbjct: 71 PPHTPA-PAPAPGPYIPPHHPH 91
>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
Length = 607
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 351 CRFLVTFQLSGLAVSSVVGAWSWGPXSA 268
C LV F++ G ++ + AW WG SA
Sbjct: 494 CHHLVIFRVHGNTLTGNLPAWVWGQQSA 521
>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
Length = 203
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 400 FLSLSRARRGPAPR--STVPFPC--NVSAVRVSGVKCRRSL 290
F+ L RR PAPR +T+P C VS+V S CR L
Sbjct: 42 FIELCIGRRSPAPRLSTTLPLACCHRVSSVYRSRWHCRLGL 82
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +2
Query: 182 EPST*TRPGCAVPGPADATSPHSPDTCGLALXGPQDQA 295
E ST T VP P+DAT+P+ + G A P+ A
Sbjct: 307 ERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDA 344
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +2
Query: 218 PGPADATSPHSPDTCGLALXGPQDQAP 298
PGPA A SPHSP P P
Sbjct: 70 PGPAAAPSPHSPSPSNAPWVAPAADIP 96
>08_02_0880 +
22203440-22204324,22204763-22204876,22204964-22205455,
22205646-22205819,22206589-22206978,22209927-22210022,
22210645-22210760,22210872-22211042,22211126-22211285,
22211388-22211573,22211665-22211793,22211918-22211996,
22212159-22212268
Length = 1033
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 451 RCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVP 347
RCSST+ + F W S + A R P P P
Sbjct: 121 RCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPP 155
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 472 RGPRSA*SGRSWRAGCRRT 528
RGPR +GRSWRA C R+
Sbjct: 569 RGPRRQ-AGRSWRASCCRS 586
>07_03_0557 +
19447367-19447517,19447630-19447730,19448359-19448480,
19448725-19448912,19449000-19449178,19449370-19449711,
19449795-19449859,19450259-19450317,19450486-19450573,
19450653-19450722,19450759-19450992,19451072-19451411,
19451643-19451691,19452690-19452780,19453077-19453442
Length = 814
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 218 PGPADATSPHSPDTCGLALXGPQDQAPTTLDTANPDS*NV 337
P P + H PD+ + P+D+AP + + + D+ N+
Sbjct: 61 PSPRPSADRH-PDSIAAVVGSPRDEAPDIISSPDGDTSNI 99
>06_03_1105 - 27634787-27636025
Length = 412
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 85 LILGAPGESGACGSAGRNGRT-ARPRPSPRCWRRALNVDPP 204
L+ + S + S+ R GR+ AR RPSP R L+VD P
Sbjct: 270 LVRSSHRHSTSSSSSSRAGRSPARRRPSPPPPPRCLSVDSP 310
>05_05_0120 + 22520285-22520569
Length = 94
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 64 ESLPSGWLILGAPGESGACGSAGRNGRTARPRPSPRC-WRRALNV 195
+ +P+G G G GA +A G + RPSP RRA++V
Sbjct: 28 DDVPAGAGGAGEDGRKGAAATADAAGGQQQARPSPAARHRRAMSV 72
>05_05_0004 -
21422483-21422785,21423354-21423938,21424746-21424849,
21425467-21425767
Length = 430
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 131 PALPHAPDSPGAPKISHPLGRLSVDGGIL 45
PALPH P AP+ S + ++ GGI+
Sbjct: 103 PALPHQPPQQPAPRTSVAVVAVAAAGGIV 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,199,876
Number of Sequences: 37544
Number of extensions: 418713
Number of successful extensions: 1593
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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