Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F21
(594 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0) 36 0.025
SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6) 32 0.40
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17) 31 0.70
SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 29 2.8
SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_30305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_21936| Best HMM Match : Collagen (HMM E-Value=1.1e-07) 29 3.7
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05) 29 3.7
SB_28417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 28 4.9
SB_21937| Best HMM Match : Collagen (HMM E-Value=4.3e-07) 28 4.9
SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_59406| Best HMM Match : PadR (HMM E-Value=9) 27 8.6
SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_38206| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_55059| Best HMM Match : Orn_Arg_deC_N (HMM E-Value=0)
Length = 635
Score = 35.9 bits (79), Expect = 0.025
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Frame = +3
Query: 453 IXVMEGSWSPVSVIREIVES-GVQE--DPFYVMDLGEVVARYXQWKELLP 593
I +++ S VI E ++S G +E D FY++DL +VV ++ +W +LLP
Sbjct: 187 IEIVKDGLSHRDVITEKIDSLGREEKDDAFYIVDLADVVLKHKKWVQLLP 236
>SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)
Length = 433
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 106 ESGACGSAGRNGRTARPRPSPRCWRRALNVDP 201
E G C +A R GR+ +P R +RR N DP
Sbjct: 179 EDGTCHNAWRVGRSEEKKPVLRVYRRQTNCDP 210
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/48 (39%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 28 KCN*TTKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARP-RPSP 168
KC K PP P G PGE GA GS G G + P +P P
Sbjct: 666 KCEACPKPPPGPAGEPGS---PGLPGEDGAIGSRGLPGPSGEPGKPGP 710
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGRTARPRPSPR 171
LG PG G G GR+G P P R
Sbjct: 893 LGTPGRQGLAGPPGRDGMKGDPGPRGR 919
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRTARP 156
GAPGE G G G G RP
Sbjct: 363 GAPGEKGEPGKQGEKGEEGRP 383
>SB_56776| Best HMM Match : CRA_rpt (HMM E-Value=5.6e-17)
Length = 905
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 469 PSITXMRCSSTTFMVLSNFTWTCFLSLSR-ARRGPAPRST 353
PS+ +C+ T F+V S F T +R +RR P PR+T
Sbjct: 107 PSLPEFKCNPTPFVVASCFNRTQVTKSARNSRRAPYPRNT 146
>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
Length = 993
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 52 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSPRC 174
PP + P LG PG++G G+ G G P P C
Sbjct: 897 PPGPKGPPGPNGCLGPPGDAGPAGNTGGAGCQPAPPCPPAC 937
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 52 PPSTESLPSGWLILGAPGESGACGSAGRNG 141
PP + P LG PGESG G+AG G
Sbjct: 642 PPGPKGPPGPNGPLGPPGESGPAGNAGGVG 671
>SB_10360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRT-ARPRPSPRCWR 180
G PG+SG G+ G+NGR A+ PR +R
Sbjct: 232 GVPGKSGRNGTPGKNGRPGAKGAMGPRGYR 261
>SB_30305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = -3
Query: 547 RSIT*KGSSCTPLSTISRITLTGDHDPSITXMRCSSTTFMVLSNFTWTCFLSLSRARRGP 368
R +T + +CTP+ T+ I+ T H P + + L + TW L+L +R P
Sbjct: 11 RCMTKRLPTCTPV-TLPFISCTPVHPPPNATVLTLTPLKKSLVDLTWIRTLALLHEKRSP 69
Query: 367 APRSTVP 347
+T P
Sbjct: 70 YHGATAP 76
>SB_21936| Best HMM Match : Collagen (HMM E-Value=1.1e-07)
Length = 195
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 88 ILGAPGESGACGSAGRNGRTARP-RPSPR 171
I G PG+ G G +G +GR +P P P+
Sbjct: 42 IPGVPGKPGTPGKSGNDGRNGKPGAPGPK 70
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 28.7 bits (61), Expect = 3.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 88 ILGAPGESGACGSAGRNGRTARP 156
+ G+PG++GA G GRNG P
Sbjct: 3472 LAGSPGQTGAPGIPGRNGTAGPP 3494
>SB_50904| Best HMM Match : NACHT (HMM E-Value=2.3e-05)
Length = 1122
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +1
Query: 151 RPRPSPRCWRRALNVDPPW 207
RP P PR WRR LN D W
Sbjct: 238 RPTPPPRNWRRVLN-DDQW 255
>SB_28417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 115
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -3
Query: 523 SCTPLSTISRITLTGDHDPSITXMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVP 347
+CTP+ T+ I+ T H P+I + + L + TW L+ +R P R+ P
Sbjct: 7 TCTPV-TLPFISCTPVHPPNIATVLTLTPLEKSLVDLTWIRTLARLLEKRSPYHRAIAP 64
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGR 144
+G PGESG+ G GR GR
Sbjct: 116 VGLPGESGSAGMVGRPGR 133
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRTARP 156
G PG SG GS GRNG P
Sbjct: 672 GPPGPSGPSGSNGRNGVKGTP 692
>SB_21937| Best HMM Match : Collagen (HMM E-Value=4.3e-07)
Length = 232
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRTARP-RPSPR 171
G PG+ G G +G +GR +P P P+
Sbjct: 44 GVPGQLGTPGKSGNDGRNGKPGAPGPK 70
>SB_2570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRTARPRP 162
G PG G G+ GRNG+ P P
Sbjct: 47 GKPGTPGKSGNDGRNGKPGAPGP 69
>SB_31576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 412 TWTCFLSLSRARRGPAPRSTVPFP 341
T CFL+L RR P R +P+P
Sbjct: 174 TKICFLNLELTRRNPTRRKFLPYP 197
>SB_59406| Best HMM Match : PadR (HMM E-Value=9)
Length = 115
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = -3
Query: 523 SCTPLSTISRITLTGDHDPSITXMRCSSTTFMVLSNFTWTCFLSLSRARRGPAPRSTVP 347
+CTP+ T+ I+ T H P + + L + TW L+L +R P +T P
Sbjct: 7 TCTPV-TLPFISCTPVHPPPNATVLTLTPLKKSLVDLTWIRTLALLHEKRSPYHGATAP 64
>SB_52097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 17/48 (35%)
Frame = +2
Query: 185 PST*TRPGCAVPGPADATSPHSPDTCGLALXGPQDQAPTTLDTANPDS 328
P RP PGPA T L P P TL +NP S
Sbjct: 410 PQIAPRPAVIAPGPAPPRLIAPSTTATLVKKEPMPGTPRTLIVSNPSS 457
>SB_46720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRTARPRPSP 168
G PG G G AG G P P+P
Sbjct: 384 GEPGFPGEIGEAGTQGEKGNPPPTP 408
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRTARP-RPSP 168
G PG G GS+GR+G P RP P
Sbjct: 998 GIPGFPGLTGSSGRDGLDGSPGRPGP 1023
>SB_38206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/65 (29%), Positives = 24/65 (36%)
Frame = +1
Query: 10 DEFFCAKCN*TTKIPPSTESLPSGWLILGAPGESGACGSAGRNGRTARPRPSPRCWRRAL 189
D FF K ++ PP P G PG G G G G + P R R+
Sbjct: 115 DNFFILKVTQGSQGPPGKRGPPGEKGDQGIPGVKGDVGPKGEKGDSGGPEVRTRS-RQGN 173
Query: 190 NVDPP 204
+ PP
Sbjct: 174 DKPPP 178
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,244,841
Number of Sequences: 59808
Number of extensions: 413205
Number of successful extensions: 1157
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1427401750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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