Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F21
(594 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-2292|AAN13727.1| 434|Drosophila melanogaster CG31268-P... 31 0.89
AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ... 31 1.2
M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collag... 29 3.6
M28334-1|AAA28422.1| 421|Drosophila melanogaster type VI-relate... 29 3.6
M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type I... 29 3.6
J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV pro-co... 29 3.6
AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,... 29 3.6
AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,... 29 3.6
AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,... 29 3.6
U65431-1|AAB64082.1| 1761|Drosophila melanogaster collagen type ... 28 8.3
AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA... 28 8.3
>AE014297-2292|AAN13727.1| 434|Drosophila melanogaster CG31268-PA
protein.
Length = 434
Score = 31.5 bits (68), Expect = 0.89
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 52 PPSTESLPSGWLILGAPGESGACGSAGRNGRTARP 156
PP +P + GAPGE G G G +G+ RP
Sbjct: 75 PPGPPGIPGLPGVEGAPGEKGDRGDRGESGQRGRP 109
>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
protein.
Length = 1286
Score = 31.1 bits (67), Expect = 1.2
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 559 TTSPRSIT*KGSSCTPLSTISRITLTGDHD-PSITXMRCSSTT 434
TT+PR T S+C P +T R T T P+ T RC++TT
Sbjct: 269 TTTPRCTT-TTSTCAPTTTTPRSTTTTTTSRPTTTTPRCTTTT 310
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 559 TTSPRSIT*KGSSCTPLSTISRITLTGDHDPSITXMRCSSTT 434
TT+PRS T +SC +T T T P+ T R ++TT
Sbjct: 909 TTTPRSTTTTSTSCPTTTTPRSTTTTCTSGPTTTTPRSTTTT 950
Score = 29.9 bits (64), Expect = 2.7
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -3
Query: 559 TTSPRSIT*KGSSCTPLSTISR-ITLTGDHDPSITXMRCSSTTFMVLSNFTWTCFLSLSR 383
TT+PR T S+C+P T R T T P+ T RC TT S T T S ++
Sbjct: 301 TTTPRCTT-TTSTCSPTRTTPRSTTTTSTSRPTTTTPRC--TTTPSTSRPTTTTPRSTTK 357
Query: 382 ARRGPAPRSTVPFP 341
AP +T P P
Sbjct: 358 TST-CAPTTTTPRP 370
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 559 TTSPRSIT*KGSSCTPLSTISRITLTGDHDPSITXMRCSSTT 434
TT+PRS T +S +T T T P+ T RC++TT
Sbjct: 237 TTTPRSTTTTTTSRPTTTTPRSTTTTTTRRPTTTTPRCTTTT 278
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 559 TTSPRSIT*KGSSCTPLSTISRITLTGDHDPSITXMRCSSTT 434
TT+PRS T +SC +T T T P+ T R ++TT
Sbjct: 941 TTTPRSTTTTCTSCPTTTTPRSTTTTCTSCPTTTTPRSTTTT 982
>M96575-1|AAB59184.1| 1775|Drosophila melanogaster type IV collagen
protein.
Length = 1775
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGRTARP 156
+GAPGE G G GR+GR P
Sbjct: 1427 VGAPGERGFTGPKGRDGRDGTP 1448
>M28334-1|AAA28422.1| 421|Drosophila melanogaster type VI-related
collagen protein.
Length = 421
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGRTARP 156
+GAPGE G G GR+GR P
Sbjct: 73 VGAPGERGFTGPKGRDGRDGTP 94
>M23704-1|AAA28404.1| 1775|Drosophila melanogaster alpha-1 type IV
collagen protein.
Length = 1775
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGRTARP 156
+GAPGE G G GR+GR P
Sbjct: 1427 VGAPGERGFTGPKGRDGRDGTP 1448
>J02727-1|AAA28423.1| 1775|Drosophila melanogaster type IV
pro-collagen protein.
Length = 1775
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGRTARP 156
+GAPGE G G GR+GR P
Sbjct: 1427 VGAPGERGFTGPKGRDGRDGTP 1448
>AE014134-846|AAN10520.1| 1779|Drosophila melanogaster CG4145-PC,
isoform C protein.
Length = 1779
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGRTARP 156
+GAPGE G G GR+GR P
Sbjct: 1428 VGAPGERGFTGPKGRDGRDGTP 1449
>AE014134-845|AAN10519.1| 1779|Drosophila melanogaster CG4145-PB,
isoform B protein.
Length = 1779
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGRTARP 156
+GAPGE G G GR+GR P
Sbjct: 1428 VGAPGERGFTGPKGRDGRDGTP 1449
>AE014134-844|AAF52204.1| 1779|Drosophila melanogaster CG4145-PA,
isoform A protein.
Length = 1779
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 91 LGAPGESGACGSAGRNGRTARP 156
+GAPGE G G GR+GR P
Sbjct: 1428 VGAPGERGFTGPKGRDGRDGTP 1449
>U65431-1|AAB64082.1| 1761|Drosophila melanogaster collagen type IV
alpha 2 protein.
Length = 1761
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRTARPRP 162
GA GE G G G+NGR P P
Sbjct: 1366 GAKGEQGYPGLPGKNGRVGAPGP 1388
>AE014134-843|AAF52203.1| 1940|Drosophila melanogaster CG16858-PA
protein.
Length = 1940
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 94 GAPGESGACGSAGRNGRTARPRP 162
GA GE G G G+NGR P P
Sbjct: 1368 GAKGEQGYPGLPGKNGRVGAPGP 1390
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,420,649
Number of Sequences: 53049
Number of extensions: 645602
Number of successful extensions: 2018
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2002
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2400202284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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