Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F20
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    29   0.53 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   5.0  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   6.6  
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    26   6.6  

>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 581  TPFPNLEKKHIILKDDAVTIAAKIRNRQLKSEDLVQ 688
            +P P+L KKHI LK   + + +  R +++K+E L Q
Sbjct: 1154 SPDPDLSKKHIKLKSLIIVVCSIERMKRMKNEWLKQ 1189


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -2

Query: 528 YVLKTRNACLIMLNAIPRIMLQVLLPGTECDVFPSPWFVVHIV 400
           Y   + N+ L   + IP I    L P T CD+ P P F V ++
Sbjct: 179 YPASSYNSALHWSHRIPNI----LNPSTLCDMLPVPQFAVRLM 217


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/56 (26%), Positives = 30/56 (53%)
 Frame = +2

Query: 560 LYWEAKRTPFPNLEKKHIILKDDAVTIAAKIRNRQLKSEDLVQMCIERIKIVNPIL 727
           L++    + FP  +KKHI++    +T+A  +   Q  ++ L  +C +++ I N  L
Sbjct: 530 LFFNLTGSIFPTSDKKHIVVSPVMLTMAESL--SQSPADSLSDVC-KKLYIANLFL 582


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/55 (23%), Positives = 27/55 (49%)
 Frame = +2

Query: 509 FLVFRTYLDLFIDYIFSLYWEAKRTPFPNLEKKHIILKDDAVTIAAKIRNRQLKS 673
           FL  R   + F      + +   RTP+ + +  +  + + AV I+ ++ NR+ K+
Sbjct: 120 FLDSREIHNPFTYGFLGILYGTSRTPYLHAQYANSFMSESAVPISIELNNREAKA 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,680
Number of Sequences: 5004
Number of extensions: 62741
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)