Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F20
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1017 - 23318187-23318348,23318747-23318857,23319859-233199...    31   0.74 
09_02_0092 + 4173741-4175417                                           28   6.9  
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878...    28   6.9  

>07_03_1017 -
           23318187-23318348,23318747-23318857,23319859-23319964,
           23320113-23320153
          Length = 139

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +2

Query: 107 FSSQVIKIMLFSFACIIISCSTNTLDANFPLDITALESSN*VSHNFHMNPRSLISGRVEH 286
           F SQ++  + FSF  ++++C        FPL +T +++   V HN     +S+I     H
Sbjct: 64  FLSQLVLCLAFSFKLVVMTC--------FPLQMTLIKAQAGVKHNMRRMNKSIIQQGSNH 115


>09_02_0092 + 4173741-4175417
          Length = 558

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 432 FPSPWFVVHIVLKAGYIIITNVV 364
           FPSPW VV +V  A  I++ +++
Sbjct: 523 FPSPWVVVSLVAAAAVIVVPSLL 545


>03_05_0884 - 28487013-28487271,28487355-28487516,28487594-28487802,
            28488490-28488630,28488876-28489071,28489207-28489379,
            28490095-28490142,28490301-28490378,28490526-28490792,
            28491689-28491842,28491928-28492064,28492459-28492536,
            28493039-28493216,28493589-28493803,28494063-28494422,
            28494497-28494973,28495561-28495665,28495838-28496020,
            28496105-28496263,28496937-28497154,28497737-28497905,
            28498262-28498568,28498699-28498826,28498902-28499060,
            28499194-28499364,28500258-28500376,28500604-28500853,
            28501007-28501759
          Length = 1950

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = -1

Query: 532  QICSEDQECVFDHVKCYSSNNVTSFAARHRMRCFSVAVVCCAHCFKSRLY 383
            + CS+    + DH+   S  N+  F+   R+ C+  A +C     ++ ++
Sbjct: 1053 ETCSQSTALLLDHMVSDSRANLDGFSQLIRLLCWCPAYICTPDAMETGIF 1102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,483,629
Number of Sequences: 37544
Number of extensions: 364598
Number of successful extensions: 648
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)