Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F20
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 31 1.1
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical... 31 1.1
AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical... 31 1.1
U53154-8|AAC25846.1| 328|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 29 4.6
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 29 4.6
AC090999-11|ABD63207.1| 356|Caenorhabditis elegans Hypothetical... 29 4.6
Z83218-4|CAB05690.2| 706|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 28 8.1
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 368 TFVIII*PAFKTMCTTNHGDGKTSHSVPGSKTCNIIRGIAFNMIKHAFLVFRT 526
T VI+I P +C+ G KT+ + + CN + F+MI FL ++T
Sbjct: 608 TTVILILPRSDDVCSVPTGSSKTTEYMESKRQCNSVPIPVFDMIH--FLTYQT 658
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
protein R07E4.1a protein.
Length = 1122
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +2
Query: 368 TFVIII*PAFKTMCTTNHGDGKTSHSVPGSKTCNIIRGIAFNMIKHAFLVFRT 526
T VI+I P +C+ G KT+ + + CN + F+MI FL ++T
Sbjct: 744 TTVILILPRSDDVCSVPTGSSKTTEYMESKRQCNSVPIPVFDMIH--FLTYQT 794
>AF067947-11|AAO25994.1| 455|Caenorhabditis elegans Hypothetical
protein T10B5.5b protein.
Length = 455
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +2
Query: 77 IIIKCSH*ILFSSQVIKIMLFSFACIIISCSTNTLDANFPLDITALESSN 226
+++KC+ L S V + LF FA +I+ + NTLDA+ PL++ ++ N
Sbjct: 152 MLVKCAATTLSSKLVSQERLF-FANMIVD-AVNTLDAHLPLNMIGIKKVN 199
>AF067947-10|AAC19232.2| 535|Caenorhabditis elegans Hypothetical
protein T10B5.5a protein.
Length = 535
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +2
Query: 77 IIIKCSH*ILFSSQVIKIMLFSFACIIISCSTNTLDANFPLDITALESSN 226
+++KC+ L S V + LF FA +I+ + NTLDA+ PL++ ++ N
Sbjct: 152 MLVKCAATTLSSKLVSQERLF-FANMIVD-AVNTLDAHLPLNMIGIKKVN 199
>U53154-8|AAC25846.1| 328|Caenorhabditis elegans Hypothetical
protein C33G8.5 protein.
Length = 328
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 488 FNMIKHAFLVFRTYLDLFIDY--IFSLYWEAKRTPFPNL 598
+ M F V +L LF+ + +F LY++A TP PN+
Sbjct: 130 YEMCGRGFGVLLGFLQLFLAFAFLFKLYFDASFTPVPNV 168
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 649 LCG-NGHSIVLKYNMLFFQIWERCPLCFPVKGEYVINE*-VQICSEDQECVFD 497
+CG NGH N W RC F GEY + V C D++CVFD
Sbjct: 28 ICGRNGHCHAGPVNGTQTSYWCRCDEGFG--GEYCEQQCDVSKCGADEKCVFD 78
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -1
Query: 649 LCG-NGHSIVLKYNMLFFQIWERCPLCFPVKGEYVINE*-VQICSEDQECVFD 497
+CG NGH N W RC F GEY + V C D++CVFD
Sbjct: 28 ICGRNGHCHAGPVNGTQTSYWCRCDEGFG--GEYCEQQCDVSKCGADEKCVFD 78
>AC090999-11|ABD63207.1| 356|Caenorhabditis elegans Hypothetical
protein Y82E9BR.4 protein.
Length = 356
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +2
Query: 488 FNMIKHAFLVFRTYLDLFIDYIFSLYWEAKRTPFPNLEKKHIILKDDAVTIAAKIRN--- 658
F + H+F R +LD ++ LY EA R L++ L D+ AK+ +
Sbjct: 208 FIPLVHSFNGIRNHLDKISNHCCPLYGEAPRVTAGLLDESLRSLDDELKNFEAKLNDFNS 267
Query: 659 -RQLKSEDLVQMCIE 700
+ KS L + C E
Sbjct: 268 FLEYKSRQLFESCSE 282
>Z83218-4|CAB05690.2| 706|Caenorhabditis elegans Hypothetical
protein C31A11.7 protein.
Length = 706
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -1
Query: 655 SDLCGNGHSIVLKYNMLFFQIWERCP 578
+D GNG++ +L Y+M++ + W RCP
Sbjct: 479 ADFFGNGNTNLL-YDMIYHKPWIRCP 503
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 523 SEDQECVFDHVKCYSSNNVTSFAARHRMRC 434
SED+ + D +KC N +F A R +C
Sbjct: 887 SEDEVTIEDEIKCAPWNTTRAFLASQREKC 916
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 523 SEDQECVFDHVKCYSSNNVTSFAARHRMRC 434
SED+ + D +KC N +F A R +C
Sbjct: 887 SEDEVTIEDEIKCAPWNTTRAFLASQREKC 916
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,890,130
Number of Sequences: 27780
Number of extensions: 356968
Number of successful extensions: 800
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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