Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F18
         (717 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2840|AAF55794.1|  381|Drosophila melanogaster CG5494-PA...    40   0.003
AY070660-1|AAL48131.1|  200|Drosophila melanogaster RH04437p pro...    35   0.096
AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA...    30   2.7  
AJ131564-1|CAB39165.1|  313|Drosophila melanogaster nucleolar pr...    29   6.3  
AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-P...    29   6.3  

>AE014297-2840|AAF55794.1|  381|Drosophila melanogaster CG5494-PA
           protein.
          Length = 381

 Score = 40.3 bits (90), Expect = 0.003
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = +3

Query: 603 GPQAHIQLTHDGQYVVDTPEVQHARASHLAQYHAAXH 713
           GP  HI +   G   VDTPEVQHA+A+H A + AA H
Sbjct: 118 GP-IHIPVLTHGGVPVDTPEVQHAKAAHAAAHAAAAH 153



 Score = 36.3 bits (80), Expect = 0.042
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = +3

Query: 603 GPQAHIQLTHDGQYVVDTPEVQHARASHLAQYHAA 707
           G  AH+ LTH G   VDTP+VQ A+A H A +  A
Sbjct: 173 GQAAHVPLTHGG-VPVDTPDVQAAKAEHYAAHAKA 206



 Score = 35.1 bits (77), Expect = 0.096
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 615 HIQLTHDGQYVVDTPEVQHARASHLA 692
           H+ + H+G   VDTPEVQHA+A+H A
Sbjct: 252 HVPVIHNG-VPVDTPEVQHAKAAHYA 276



 Score = 33.9 bits (74), Expect = 0.22
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +3

Query: 603 GPQAHIQLTHDGQYVVDTPEVQHARASHLAQYHAAXH 713
           GP  HI + H+G   V+  EVQHARA+HL    AA H
Sbjct: 319 GP-IHIPVIHNG-VPVEPAEVQHARAAHLNALAAAGH 353



 Score = 32.3 bits (70), Expect = 0.68
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +3

Query: 648 VDTPEVQHARASHLAQYHAA 707
           V+TPEVQHA+A+H A + AA
Sbjct: 218 VETPEVQHAKAAHFAAHAAA 237


>AY070660-1|AAL48131.1|  200|Drosophila melanogaster RH04437p
           protein.
          Length = 200

 Score = 35.1 bits (77), Expect = 0.096
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 615 HIQLTHDGQYVVDTPEVQHARASHLA 692
           H+ + H+G   VDTPEVQHA+A+H A
Sbjct: 71  HVPVIHNG-VPVDTPEVQHAKAAHYA 95



 Score = 33.9 bits (74), Expect = 0.22
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +3

Query: 603 GPQAHIQLTHDGQYVVDTPEVQHARASHLAQYHAAXH 713
           GP  HI + H+G   V+  EVQHARA+HL    AA H
Sbjct: 138 GP-IHIPVIHNG-VPVEPAEVQHARAAHLNALAAAGH 172



 Score = 32.3 bits (70), Expect = 0.68
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +3

Query: 648 VDTPEVQHARASHLAQYHAA 707
           V+TPEVQHA+A+H A + AA
Sbjct: 37  VETPEVQHAKAAHFAAHAAA 56


>AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA
           protein.
          Length = 950

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +3

Query: 177 AQASYYLGAPAPIQLSPDGKYVLDTPEVXXXXXXXXXXXXXXSTSHGAWSPGYGGYASDA 356
           A  S   GAPAP    P  KY    P+               S+S+GA +P    Y + A
Sbjct: 254 APPSQSYGAPAP----PSSKY--GPPKSAPSSSYGAPRPAAPSSSYGAPAPPSSSYGAPA 307

Query: 357 ----HYGAPAAGLYKYGPAPLA 410
                YGAPAA    YG AP A
Sbjct: 308 APSSSYGAPAAPSSSYG-APAA 328


>AJ131564-1|CAB39165.1|  313|Drosophila melanogaster nucleolar
           protein, putative protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +3

Query: 330 GYGGY-ASDAHYGAPAAGLYKYG 395
           GYGGY  +  +YG  A+G Y YG
Sbjct: 247 GYGGYYGAGGYYGGAASGGYSYG 269


>AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-PA
            protein.
          Length = 3539

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 526  PTHPSRTPQ-LPSPTVPVTLLVTANGLVPR 612
            P  P R  Q LP P VP+ L+  AN L P+
Sbjct: 1512 PVPPPRMQQELPMPLVPLPLVTNANALAPQ 1541


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,083,943
Number of Sequences: 53049
Number of extensions: 339499
Number of successful extensions: 1523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1520
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)