Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F18
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.7  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -2

Query: 158 EDNQRLHDEFVXNXNFXRESKRTSWALLESQDXLKKFXPKQSSVCNHLPRPE 3
           +DN    D    N +   + ++ ++A  E  D  +   PK+  +   LP  E
Sbjct: 111 DDNNDYEDNDYGNQDNRNDRRKKTFAAREDNDEEEAQKPKEQYIPPELPNDE 162


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 670 CCTSGVSTTYWPS 632
           C TS  STT WP+
Sbjct: 771 CATSNYSTTRWPA 783


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 66 GRAQEIXAEAIECLQ 22
          G+ Q+   EAI+CLQ
Sbjct: 45 GKEQDFRFEAIQCLQ 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,125
Number of Sequences: 438
Number of extensions: 1994
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)