Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F16
         (584 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...   124   1e-29
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    26   4.7  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   6.2  
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ...    25   6.2  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   8.1  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   8.1  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score =  124 bits (299), Expect = 1e-29
 Identities = 58/102 (56%), Positives = 78/102 (76%)
 Frame = +3

Query: 267 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELS 446
           + + F+ E++++M LIIN++Y NKEIFLRELISN SDALDKIR  SL+D   L+A  +L 
Sbjct: 5   ETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLF 64

Query: 447 IRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFL 572
           IRI  + + ++L I D+G+GMT+ DLINNLG IAKSGT  F+
Sbjct: 65  IRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFM 106


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
 Frame = -3

Query: 414 GPSATSDGSC--PTHLN---RSRSTRGGRSLY 334
           GPS TSDG C    +LN   R+ ST  G S++
Sbjct: 417 GPSGTSDGLCELQAYLNSPIRANSTSNGISIF 448


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 371  TVRDQLAEEDLFISVERVDDELHHAVDLRLERVVLRAV 258
            T+   L+ + L I+  R+ DE++  +D R ERVV R +
Sbjct: 964  TIMYLLSLQGLAIAPFRIVDEINQGMDPRNERVVHRHI 1001


>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 339 EIF--LRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIK 458
           E+F  + E +SNGS  L +  L   +D  +LE++ ++   IK
Sbjct: 121 EVFSVIMEHLSNGSPVLSEEPLKGASDTQILESDSQIVAMIK 162


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 49  NIFGFSGSASCCFQDGARLKKGLAQWKRSQL 141
           N +    +A+C  +D A LKK +  WK  +L
Sbjct: 128 NTYYIVTNAACSEKDEANLKKHIENWKGVEL 158


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 9/91 (9%)
 Frame = -1

Query: 500 AGVDDVQQPLVGLGLDADAELRVRFQHAAVRQRHQTDLVQRI*-TVRDQLAEE------- 345
           +G DD   PL+   L+         +  + +     D V  I  TV+ Q  E        
Sbjct: 138 SGEDDTTAPLIENALELGTTGTFDSEETSPQMNTTLDFVSGIIPTVKFQFLERILWRTLR 197

Query: 344 -DLFISVERVDDELHHAVDLRLERVVLRAVA 255
            +LFI   R DD L H  +   E+ +   +A
Sbjct: 198 GNLFIHQVRADDSLIHGAEKNEEKTIFLVIA 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,728
Number of Sequences: 5004
Number of extensions: 27674
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)