Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F15
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 31 0.14
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 30 0.33
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 29 0.44
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 27 1.8
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 27 2.3
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 27 2.3
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 27 3.1
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.1
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 7.2
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc... 25 7.2
SPBC83.16c |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.2
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 25 7.2
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 9.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 9.5
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/47 (31%), Positives = 32/47 (68%)
Frame = +2
Query: 152 EXYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMRE 292
E ++LE D S+L+ L+R+N+++ +QLK + NI++++++ E
Sbjct: 637 EHPKVLEDN-DSTISSLESLKRENEELREQLKVEHEENISMQKQLSE 682
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 134 NNEAITEX-YELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVS 310
NNE + E+L + +DELNS LE + + + L + ++++E + +S
Sbjct: 20 NNEGLDGIEQEILAAGIDELNSRTRLLENDIKVMKSEFQRLTHEKSTMLEKIKENQEKIS 79
Query: 311 NS 316
N+
Sbjct: 80 NN 81
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 29.5 bits (63), Expect = 0.44
Identities = 13/61 (21%), Positives = 32/61 (52%)
Frame = +2
Query: 152 EXYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN*RNA 331
E + +++++E+ + L+ + + + Q+K LL+ N ++++ + D N NA
Sbjct: 308 EKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNA 367
Query: 332 N 334
N
Sbjct: 368 N 368
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 188 LNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 319
L S + E + +H L+ L Q+N +++ E+ E+N ++++ N
Sbjct: 520 LKSQIRDQELTIEKLHDSLETLSQTNNSLQCEISEKNAELNSVN 563
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 134 NNEAITEXYELLEST---LDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMRE 292
N++ + E E + T + + LER+ DD+ Q+L+E+ ++ E+ E
Sbjct: 98 NDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDMEQKLEEMTDKYTKVKAELDE 153
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 149 TEXYE-LLESTLDELNSALDFLERKNDDIHQQLKE 250
T+ YE L+ +LD +++ F+++ DDI + LKE
Sbjct: 844 TKLYERALQQSLDTISANSSFIDKSLDDITRWLKE 878
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.1 bits (57), Expect = 2.3
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +2
Query: 113 IXPPXAXNNEAITEXYELLESTLDELNSALDFLERKNDDIHQQLKEL-LQSNIAIRQEMR 289
I PP NN+ T+ LLES N + L D++++ E ++S+ + +
Sbjct: 160 IRPPWIGNNDHATDKENLLESDASSSNDSESELTDSADNMNESDSESEIESSDSDHDD-- 217
Query: 290 EENKDVSNSN*RN 328
EN D N RN
Sbjct: 218 GENSDSKLDNLRN 230
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +2
Query: 212 ERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 319
+R+N Q +++L +SN+ + + E K SNSN
Sbjct: 550 KRRNSGTEQVVRQLSKSNVEVIGKGGERKKVASNSN 585
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 146 ITEXYELLESTLDELNSALDFLERKNDDIHQQLKE 250
++E L T ELNSALD +++ +IH +LKE
Sbjct: 1339 LSEVEMKLVDTRKELNSALDSCKKREAEIH-RLKE 1372
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +2
Query: 158 YELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSN 313
++L + +D+L D LE+ ++ ++ + L QSN + + + EE D++N
Sbjct: 1129 HDLCANFVDDLKEKSDALEQLTNEKNELIVSLEQSN-SNNEALVEERSDLAN 1179
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 134 NNEAITEXYELLESTLDELNSALDFLER-KNDDIHQQLK 247
NNE + + L+ + E+ +++ K DD+H+QLK
Sbjct: 911 NNEGLVTEIKTLQDKIMEIGGIRYRIQKSKVDDLHEQLK 949
>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
Lag1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 423 Y*YYHLSIFSDQYHKVSVSF--K*CIIIHLQYLSMNNYLACLHHLNVISCIFMSVG 584
Y Y++S Y+ + + F + +++HL+ +++ HH+ + I +S G
Sbjct: 192 YPQYYMSPLFKAYYLIQLGFWLQQILVLHLEQRRADHWQMFAHHIVTCALIILSYG 247
>SPBC83.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 563
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = +3
Query: 213 SVKMMIFTNN*KSFCNPILQLDKKCVKKIRTSATVIEEMQIQHYFKFNCA 362
S+ +M+ + FC+ + K V K+R + ++ ++ +H+ F+ A
Sbjct: 103 SIGLMLLLSALIGFCSESIVTSVKSVYKLRKAHSIFSKINKRHFDHFSAA 152
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 188 LNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSN 313
+++ L+ LE DD + +LKE NIA +QE+ ++S+
Sbjct: 433 VDAYLNPLEFNFDDKNVKLKEFGSPNIAYKQELNSFQGELSS 474
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = +3
Query: 225 MIFTNN*KSFCNPILQLDKK-CV--KKIRTSATVIEEM 329
++ ++N K+F NP++ L +K CV +K+ TV ++M
Sbjct: 202 LLHSSNLKAFINPLIPLTQKFCVQLQKLFADLTVSDQM 239
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +2
Query: 161 ELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQE 283
EL +S + + A + ++ H+Q K L++S I+ R+E
Sbjct: 963 ELEKSNIQQKYLASEKTLEMMNETHEQFKHLVESEISTREE 1003
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,182,688
Number of Sequences: 5004
Number of extensions: 38976
Number of successful extensions: 108
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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