Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F15
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437... 29 2.4
07_01_0278 + 2039873-2039896,2040342-2040407,2040842-2040903,204... 29 3.2
06_03_0092 + 16546204-16546693,16546958-16547028,16547145-165472... 29 3.2
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 28 5.6
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 28 5.6
06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922... 28 7.4
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 28 7.4
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 28 7.4
07_03_0029 - 12614394-12614984,12617973-12618005,12618362-12618370 27 9.8
07_01_0463 + 3502708-3503535 27 9.8
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 27 9.8
>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
4378900-4378970,4379038-4379144,4379241-4379711,
4379791-4379976,4380132-4380425,4380820-4381434,
4382219-4382615,4382768-4382850,4383397-4383567,
4384046-4384243,4384754-4385314,4385401-4385460,
4385553-4385869,4385980-4386403,4386539-4387006,
4387093-4387209,4387306-4387427,4387506-4388247,
4388453-4388485,4388625-4388879,4388975-4389160,
4390115-4390453,4391293-4392045
Length = 3017
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 158 YELLESTLDELNSALDFLERKNDDIHQQLKELLQSNI--AIRQEMREENK 301
Y+LL E A+ LER DDI L++L+Q + +R+++ EE K
Sbjct: 906 YDLLMK--GETGLAVATLERLGDDIESDLRQLMQGTVRRLLRRQIAEEMK 953
>07_01_0278 +
2039873-2039896,2040342-2040407,2040842-2040903,
2042839-2043067,2043787-2044014,2044177-2044469,
2044594-2044909
Length = 405
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 161 ELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQ 280
+L + LD+L ++ L K+D++HQ L+++ + IR+
Sbjct: 114 KLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIRE 153
>06_03_0092 + 16546204-16546693,16546958-16547028,16547145-16547221,
16547322-16547469,16550080-16550148,16550348-16550509,
16550625-16550785,16551240-16551324,16552068-16552144,
16552234-16552441,16555844-16555921,16556463-16556591,
16556665-16556808,16556893-16557038,16557137-16557293,
16557391-16557449,16557582-16557741,16557849-16557998,
16558093-16558229,16558325-16558471,16558556-16558657,
16558742-16558799,16558895-16558996,16559729-16559766,
16559868-16559994,16560075-16560245,16560334-16560465,
16560577-16560686,16560866-16560926,16561031-16561208,
16561293-16561498,16561590-16561709,16561903-16562001,
16562152-16562370,16562701-16562840,16563175-16563286,
16563375-16563425,16563509-16563589,16563683-16563853,
16563934-16564089,16564174-16564380,16565145-16565215,
16565315-16565414,16565783-16565839,16566156-16566212,
16566308-16566388,16566467-16566606,16566641-16566764
Length = 2041
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 119 PPXAXNNEAI---TEXYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMR 289
PP E + TE + L + ++EL ++L +++ DD+ ++ E Q+N +++M
Sbjct: 1499 PPVVQQTEVLVQDTEKVDSLTAEVEELKTSLQSEKQRADDLEKKRSEEQQANEEKQKKME 1558
Query: 290 E 292
E
Sbjct: 1559 E 1559
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Frame = +2
Query: 173 STLDELNSALDFLERKNDDIHQQLKELLQSN----IAIR--QEMREE-NKDVS 310
S ++EL L + N D+H QL+++ +SN +A++ EM E+ NK++S
Sbjct: 421 SQIEELKQELGHEKNLNGDLHLQLQKMQESNSELLLAVKDLDEMLEQKNKEIS 473
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/54 (25%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +2
Query: 161 ELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEM-REENKDVSNSN 319
ELL+ L+ELN + + + +++H +L E +++++ R E + VS+++
Sbjct: 213 ELLQQQLNELNVSKERISTNMEELHNELSEKEAKLRRLQEDLSRREKEHVSDAS 266
>06_03_0672 +
23359510-23361253,23389969-23390203,23392078-23392234,
23392535-23392597
Length = 732
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/52 (25%), Positives = 27/52 (51%)
Frame = +2
Query: 134 NNEAITEXYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMR 289
N + + E ++ + EL + + LER N ++ ++L L N +RQ ++
Sbjct: 664 NRVSAQQARERKKAYMSELEARVKDLERSNSELEERLSTLQNENQMLRQVLK 715
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 140 EAITEXYELLESTLDELNSALDFLERKNDDIHQQ---LKELLQSNIAIRQE 283
EAI + + E E S++D +R ND + + LKE QS++ + Q+
Sbjct: 184 EAILQKFAKFEERTREYQSSIDDQKRSNDALQMELMRLKEQTQSSLKVIQK 234
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/54 (22%), Positives = 28/54 (51%)
Frame = +2
Query: 152 EXYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSN 313
E +++ +EL A L+ + + +Q E + S + + ++ E+N+ +SN
Sbjct: 754 EQISVMQKNNEELELANSNLQNELAMVQEQKNEAVASTVELGNKLEEQNQQISN 807
>07_03_0029 - 12614394-12614984,12617973-12618005,12618362-12618370
Length = 210
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 170 ESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 301
+S LD+L + ++K D + Q+ ELL IRQEM E +
Sbjct: 122 KSKLDKLIVGPESSQKKLDKLKQKESELLAQLEQIRQEMASEQQ 165
>07_01_0463 + 3502708-3503535
Length = 275
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 167 LESTLDELNSALDFLERKNDDIHQQLKELLQSNI 268
L++ L+++++ + L+ K +DI +QLKE L+ +
Sbjct: 188 LKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEEL 221
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Frame = +2
Query: 137 NEAITEXYELLESTLDELNSALDFLERK-NDDIHQQLKELLQSNIA---IRQEMREENKD 304
N+ + + Y+ LES DEL ERK N ++++L+ L++ +I RQ ++ + +
Sbjct: 536 NKELLDAYKKLESATDEL-----VRERKINATLNRELEALVEQSIVESEARQALQADLDE 590
Query: 305 VSNS 316
V+NS
Sbjct: 591 VTNS 594
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,525,592
Number of Sequences: 37544
Number of extensions: 195255
Number of successful extensions: 466
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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