Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F15
(652 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.23
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 31 0.54
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr... 31 0.71
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch... 31 0.71
M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein. 31 0.71
U13070-7|AAC46638.1| 414|Caenorhabditis elegans Rabaptin (rab e... 29 2.2
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 29 3.8
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 29 3.8
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 29 3.8
U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-link... 28 6.6
U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-link... 28 6.6
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 28 6.6
U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-link... 28 6.6
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 28 6.6
AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-lin... 28 6.6
AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-lin... 28 6.6
AF016679-3|AAB66160.1| 578|Caenorhabditis elegans Hypothetical ... 28 6.6
AF016679-2|AAB66159.1| 658|Caenorhabditis elegans Hypothetical ... 28 6.6
>AF014939-5|AAB63928.2| 302|Caenorhabditis elegans Hypothetical
protein ZC132.6 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +2
Query: 140 EAITEXYELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMRE 292
EA+ Y EST++ LN L + KND I Q KEL ++ + I ++R+
Sbjct: 144 EALKNKYTNSESTINSLNEKLLKEKSKNDSIQAQ-KELYENLVIIIDQLRQ 193
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +2
Query: 167 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREE 295
LESTLDEL L+ +R D +Q ++ ++ + I QE+ EE
Sbjct: 1037 LESTLDELEDTLEREKRGRQDCEKQRRK-VEGELKIAQELIEE 1078
>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 167 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 301
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 1634 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 1678
>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical protein
T18D3.4 protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 167 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 301
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 1634 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 1678
>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain 2
protein.
Length = 1947
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 167 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 301
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 1634 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 1678
>M37235-1|AAA28122.1| 273|Caenorhabditis elegans myosin II protein.
Length = 273
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 167 LESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 301
LE+ ++EL ALD + N+D + ++ L ++Q + EE K
Sbjct: 134 LEADINELEIALDHANKANEDAQKNIRRYLDQIRELQQTVDEEQK 178
>U13070-7|AAC46638.1| 414|Caenorhabditis elegans Rabaptin (rab
effector) protein 5 protein.
Length = 414
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 167 LESTLDELNSALDFLERKNDD---IHQQLKELLQSNIAIRQEMREENKDV 307
+E D+LN A D L++ +DD + ++ K+LL S QE+R E D+
Sbjct: 125 IEVFTDQLNLARDKLQQADDDFVTLGKKYKKLLGSTRKSAQELRSEKIDM 174
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 137 NEAITEXYELLESTLDELNSALDFLERKNDDIHQQLKE 250
NE + + LES L ++ L+ ++ +N+D+ +Q K+
Sbjct: 918 NEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKK 955
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 137 NEAITEXYELLESTLDELNSALDFLERKNDDIHQQLKE 250
NE + + LES L ++ L+ ++ +N+D+ +Q K+
Sbjct: 918 NEKLNQLKATLESKLSDITGQLEDMQERNEDLARQKKK 955
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 161 ELLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENKDVSNSN 319
E+L+ L + + LE DD+H+++ L SN + + + + +SNS+
Sbjct: 155 EILQEENSNLTAKNEKLEETVDDLHEKVANLETSNKELTEINVDNERKISNSS 207
>U22831-14|AAN84802.1| 334|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform e protein.
Length = 334
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 648 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 517
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 271 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 312
>U22831-12|AAL65784.1| 614|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform b protein.
Length = 614
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 648 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 517
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 551 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 592
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 648 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 517
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 564 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 605
>U22831-10|AAM98012.1| 667|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform c protein.
Length = 667
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 648 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 517
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 604 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 645
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 648 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 517
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 564 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 605
>AY053364-1|AAL15152.1| 664|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2a protein.
Length = 664
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 648 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 517
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 601 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 642
>AF272738-1|AAK94896.1| 614|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-2c protein.
Length = 614
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 648 YYVLLTHFFFCEQCSTKCYFSFLLT*ICNL*HLNGANKLNNYSY 517
+YVL T + FCE C F+ L T L ++N + LN + Y
Sbjct: 551 FYVLATIYGFCETCKASPSFNTLYTISYYLCYMN--SPLNPFCY 592
>AF016679-3|AAB66160.1| 578|Caenorhabditis elegans Hypothetical
protein T28C12.4b protein.
Length = 578
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 164 LLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 301
LL T E+NSA+D L RKN +++ + + +R ++K
Sbjct: 347 LLRGTEKEINSAIDVLSRKNRLSRSKIEAMTEKVYGDSPALRADSK 392
>AF016679-2|AAB66159.1| 658|Caenorhabditis elegans Hypothetical
protein T28C12.4a protein.
Length = 658
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 164 LLESTLDELNSALDFLERKNDDIHQQLKELLQSNIAIRQEMREENK 301
LL T E+NSA+D L RKN +++ + + +R ++K
Sbjct: 427 LLRGTEKEINSAIDVLSRKNRLSRSKIEAMTEKVYGDSPALRADSK 472
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,186,087
Number of Sequences: 27780
Number of extensions: 223436
Number of successful extensions: 752
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -