Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F13
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 252 5e-68
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 156 4e-39
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 127 1e-30
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 118 7e-28
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 3e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 3e-13
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 69 7e-13
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 48 2e-06
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 29 0.55
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 29 0.73
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 28 1.7
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.7
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom... 27 2.2
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 27 3.9
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.8
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 26 6.8
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 9.0
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 9.0
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 9.0
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 252 bits (616), Expect = 5e-68
Identities = 125/215 (58%), Positives = 156/215 (72%), Gaps = 16/215 (7%)
Frame = +3
Query: 150 GTGSXXLGFAGNKEPQFIIPSTIAIKXT-AKVGDQSTRRMT-------------KAVEDL 287
GTG LG+AGN P ++ P+ IA + A G + + + +A EDL
Sbjct: 13 GTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDL 72
Query: 288 DFFIGDEAFE--ATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPP 461
DFFIG++A + + GYS+ YP+RHG +E+WD MER+ +Q +FKYLR EPEDH+FL+TEPP
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 462 LNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTH 641
LN PENRE AEIMFESFN GLYIAVQAVLALAASW S +R+ TG VVDSGDGVTH
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 642 IVPVAEGYVIGSCIKHIPIAGXNITSFIQSLLRER 746
I+PVAEGYVIGS IK +P+AG ++T F+QSLLR+R
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 156 bits (378), Expect = 4e-39
Identities = 84/212 (39%), Positives = 119/212 (56%), Gaps = 1/212 (0%)
Frame = +3
Query: 114 MGXHFPACVXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDF 293
M A V G+G GFAG+ P+ + PS VG + + D
Sbjct: 1 MEEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHHGIMVGMGQKDS 52
Query: 294 FIGDEAFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNT 470
++GDEA G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN
Sbjct: 53 YVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNP 112
Query: 471 PENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVP 650
NRE + +I+FE+FN P Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP
Sbjct: 113 KSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRT--------TGIVLDSGDGVTHTVP 164
Query: 651 VAEGYVIGSCIKHIPIAGXNITSFIQSLLRER 746
+ EGY + I + +AG ++T ++ +L ER
Sbjct: 165 IYEGYALPHAIMRLDLAGRDLTDYLMKILMER 196
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 127 bits (307), Expect = 1e-30
Identities = 73/197 (37%), Positives = 111/197 (56%), Gaps = 1/197 (0%)
Frame = +3
Query: 150 GTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY 329
GTG +G+A + P+F PS + + + ++ T V+ D +GDEA
Sbjct: 11 GTGFVKVGYAKDNFPRFQFPSIVG-RPILRAEEK-----TGNVQIKDVMVGDEAEAVRSL 64
Query: 330 -SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMF 506
VKYP+ +GI+ D++ M + + F+ L+ +P L+TEPP+N NRE + E MF
Sbjct: 65 LQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMF 124
Query: 507 ESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIK 686
E + G+Y+A+QAVL+L A S +G+VVDSGDGVTHIVPV E V+ +
Sbjct: 125 ERYGFGGVYVAIQAVLSLYAQGLS--------SGVVVDSGDGVTHIVPVYESVVLNHLVG 176
Query: 687 HIPIAGXNITSFIQSLL 737
+ +AG + T ++ SLL
Sbjct: 177 RLDVAGRDATRYLISLL 193
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 118 bits (285), Expect = 7e-28
Identities = 74/208 (35%), Positives = 115/208 (55%), Gaps = 3/208 (1%)
Frame = +3
Query: 129 PACVXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDE 308
P C+ G+G GFAG+ P+ + P+ + +V S ++ D F+G E
Sbjct: 11 PICIDN-GSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQK--------DMFVGSE 61
Query: 309 AFEATGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPLNTPEN 479
A G ++ P+ GI+++W ME I ++ + L PE+H L+TEPPL N
Sbjct: 62 AQNLRGLLKIQRPIERGIIQNWSDMEE-IWSYIYSDQQLNTLPEEHPLLLTEPPLANIRN 120
Query: 480 REYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAE 659
+E +AE +E+ NVP L ++Q VLAL AS +RT TGIV++ GDG+TH VP+ +
Sbjct: 121 KEKIAEYFYETLNVPALSFSLQPVLALYAS--ART------TGIVLECGDGLTHSVPIYD 172
Query: 660 GYVIGSCIKHIPIAGXNITSFIQSLLRE 743
G+ I S I+ I G ++T ++Q LR+
Sbjct: 173 GFSIPSAIQQEEIGGRDVTDYLQLQLRK 200
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 77.0 bits (181), Expect = 3e-15
Identities = 56/212 (26%), Positives = 92/212 (43%)
Frame = +3
Query: 129 PACVXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDE 308
P+ V G+ G+AG + P I+PS ++ T R V++L
Sbjct: 11 PSLVIDPGSCWTRFGYAGEESPMTILPSYYGVRSDV------TGRNKYVVDELQIHA--- 61
Query: 309 AFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 488
G VK +GI++DW+ E+ + + L+ P ++ ++TEP N R+
Sbjct: 62 --PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQ 119
Query: 489 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 668
+ E FE +VP Y+ QAV A+ KS T ++VD G + PV +G +
Sbjct: 120 IMEAAFEQLHVPAFYLTKQAVCVAFANSKS--------TALIVDIGSDNASVTPVVDGLI 171
Query: 669 IGSCIKHIPIAGXNITSFIQSLLRERXVGIPP 764
I I +AG + + I+ L + PP
Sbjct: 172 IRKGIFKQSLAGDFLNANIEQLFNTMNIEFPP 203
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.1 bits (164), Expect = 3e-13
Identities = 48/204 (23%), Positives = 90/204 (44%)
Frame = +3
Query: 150 GTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGY 329
G+ G+ G K+P+ + + ++ K+ +R T D +G +
Sbjct: 32 GSWQLRAGWGGEKDPKLVFDNLVSRYRDRKL----SRTSTLVGNDTLIEVGSRSI----- 82
Query: 330 SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFE 509
+ P ++ +WDLME+ ++ K L + +H MTEP N R + E++FE
Sbjct: 83 -ARSPFERNVISNWDLMEQVLDYTFLK-LGIDRMEHPICMTEPLANPTYVRSTMTELLFE 140
Query: 510 SFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKH 689
+N P + + + + + K +S GIV++ G+ +H++PV G I S K
Sbjct: 141 LYNAPSVAYGIDGLFSFYHNTKPSSS------GIVLNLGNAASHVIPVLNGERILSEAKR 194
Query: 690 IPIAGXNITSFIQSLLRERXVGIP 761
I G +S++ L + + P
Sbjct: 195 ISWGGSQSSSYLLKLFQIKYPSFP 218
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 68.9 bits (161), Expect = 7e-13
Identities = 44/147 (29%), Positives = 68/147 (46%)
Frame = +3
Query: 324 GYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIM 503
G +K +R+G VE+WD+ + + L+ P +H L+TEP N PENR E M
Sbjct: 62 GMEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETM 121
Query: 504 FESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCI 683
FES P Y+A Q A AS K T +VD G + + + +G+V+
Sbjct: 122 FESLRCPATYLAKQETCAAFASGKG--------TACLVDIGAERSSVSAIYDGFVLQKGY 173
Query: 684 KHIPIAGXNITSFIQSLLRERXVGIPP 764
+ +G I + LR++ + P
Sbjct: 174 QVQHFSGNAINDILAQTLRDKNFEVMP 200
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 47.6 bits (108), Expect = 2e-06
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Frame = +3
Query: 324 GYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIM 503
GY V + + WDL+ R + + D+ L+T+P P +++
Sbjct: 66 GYLVHWSTETAV---WDLVMRNVG-----VMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 504 FESFNVPGLYIAVQAVLALAASWKSRTSAERTFTG------IVVDSGDGVTHIVPVAEGY 665
FE F A L + E +TG +V+DSG THI+PV +
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFS 177
Query: 666 VIGSCIKHIPIAGXNITSFIQSLLRER 746
V +K + + G +T++++ ++ R
Sbjct: 178 VQEQAVKRVDVGGKLLTNYLKEVISYR 204
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 29.5 bits (63), Expect = 0.55
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 505 LSHLMCQAFTLLYKPFLLWLRHGS 576
++ L+C + L+ KPF+LW RH +
Sbjct: 627 IAALICVPWLLIVKPFVLWRRHSN 650
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 29.1 bits (62), Expect = 0.73
Identities = 23/88 (26%), Positives = 35/88 (39%)
Frame = +3
Query: 255 TRRMTKAVEDLDFFIGDEAFEATGYSVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPED 434
T K +E LD E + + VK + + L RY VF + + E E
Sbjct: 326 TENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKECEI 385
Query: 435 HHFLMTEPPLNTPENREYLAEIMFESFN 518
+ + LN EN+E + EI + N
Sbjct: 386 NAHQFGKLDLNDTENKELVTEIFDSAIN 413
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = -3
Query: 302 TDEKIQIFDSLSHPPSTLIANFCSXFYRYG*WNNKLWFLVTGKTQXXRPGADXXNTSWEM 123
TDE + DSLSHP +++ G NN + T +T+ TS E+
Sbjct: 271 TDESASLEDSLSHPTKSILDQLADKMEVDG-LNNNSNYSATPRTRVVNGQIVLDETSLEV 329
Query: 122 GAHFDD 105
H D
Sbjct: 330 DRHERD 335
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = -3
Query: 674 SNNISFCNWNNVSNAISAVYYDASEGAFSRRT*LP*RSQSKNGLYSNV 531
S+N ++ WN+ S+ S+V+ + + + S + +P S + Y N+
Sbjct: 348 SSNTTYFYWNSTSSLSSSVFTNTTSSSNSTNSSIPTTYPSNSTTYQNI 395
>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 438 HFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVV 617
+F + L+ P R+YL ++ I+V +L L WKS TSA +G V+
Sbjct: 109 YFTPAQAFLSQPIIRQYLTLLLICLVETTVYQISVVLLLCLTMGWKSWTSA----SGAVI 164
Query: 618 DSGDGVTHIVPV 653
S T ++PV
Sbjct: 165 LSSS--TRMLPV 174
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 417 RAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAAS 569
+A+ + HH TEP + E REY+ E + E + P + I + L AS
Sbjct: 9 QAKQQPHH---TEPYIKALEAREYIIEQVPEELSKPKVAIICGSGLGTLAS 56
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 742 SRSND*INEVMFXPAIGMCFIHDPITYPS 656
S ++ + ++ A+G FIH ITYPS
Sbjct: 415 SEKDNVLTYILQDQAVGPSFIHKVITYPS 443
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 522 PGLYIAVQAVLA--LAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGY 665
PG ++ +A L WK S+ + F+ + V G+G+ + + EGY
Sbjct: 249 PGKHVFEDLAIAAFLIELWKQTYSSNKEFSFVDVGCGNGLLVYLLLMEGY 298
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 648 PVAEGYVIGSCIKHIPIAGXNI 713
P G+V+G+C+ + +AG NI
Sbjct: 178 PYHAGHVLGACMYFVEMAGVNI 199
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 435 HHFLMTEPPLNTPENREYLAEIMFESFNVPGL 530
H FL+T TP+ L I+F PGL
Sbjct: 618 HSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +3
Query: 444 LMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDS 623
++++ P TPE E+L ++ +FN + AS + T F +V D
Sbjct: 14 VISDAPKPTPEKGEFLGRVIRVAFN------PIDWKTLYNASIEKGTVGGTDFVAVVEDV 67
Query: 624 GDGV 635
G+GV
Sbjct: 68 GEGV 71
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,843,731
Number of Sequences: 5004
Number of extensions: 57652
Number of successful extensions: 164
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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