Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F13
(766 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 127 9e-42
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 156 2e-38
SB_56| Best HMM Match : Actin (HMM E-Value=0) 156 2e-38
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 156 2e-38
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 156 2e-38
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 133 2e-31
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 7e-31
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 127 1e-29
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 84 2e-25
SB_54| Best HMM Match : Actin (HMM E-Value=0) 103 2e-22
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 96 2e-20
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 93 2e-19
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 79 4e-15
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 39 0.005
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 36 0.036
SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5) 31 1.0
SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16) 30 1.8
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83) 29 4.1
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 127 bits (307), Expect(2) = 9e-42
Identities = 58/93 (62%), Positives = 70/93 (75%)
Frame = +3
Query: 171 GFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVKYPVR 350
G+ K Q TIAIK +AKVG++S R K VEDLDFFIGDEA + Y+ K+P+R
Sbjct: 244 GYDLAKAVQSNTQGTIAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATKWPIR 303
Query: 351 HGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLM 449
H IVEDWDLMER+ EQC+FKYLRAEPEDH+FL+
Sbjct: 304 HAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 61.3 bits (142), Expect(2) = 9e-42
Identities = 27/36 (75%), Positives = 30/36 (83%)
Frame = +3
Query: 546 AVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPV 653
AVLALAASW SR ERT TG V+DSGDGVTH++PV
Sbjct: 337 AVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPV 372
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 156 bits (379), Expect = 2e-38
Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Frame = +3
Query: 132 ACVXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEA 311
A V G+G GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 58
Query: 312 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 488
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 489 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 668
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYA 170
Query: 669 IGSCIKHIPIAGXNITSFIQSLLRER 746
+ I + +AG ++T ++ +L ER
Sbjct: 171 LPHAILRLDLAGRDLTDYLMKILTER 196
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 156 bits (379), Expect = 2e-38
Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Frame = +3
Query: 132 ACVXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEA 311
A V G+G GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 7 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 58
Query: 312 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 488
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 118
Query: 489 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 668
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY
Sbjct: 119 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYA 170
Query: 669 IGSCIKHIPIAGXNITSFIQSLLRER 746
+ I + +AG ++T ++ +L ER
Sbjct: 171 LPHAILRLDLAGRDLTDYLMKILTER 196
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 156 bits (379), Expect = 2e-38
Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Frame = +3
Query: 132 ACVXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEA 311
A V G+G GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 312 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 488
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 489 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 668
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYA 171
Query: 669 IGSCIKHIPIAGXNITSFIQSLLRER 746
+ I + +AG ++T ++ +L ER
Sbjct: 172 LPHAILRLDLAGRDLTDYLMKILTER 197
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 156 bits (378), Expect = 2e-38
Identities = 84/206 (40%), Positives = 120/206 (58%), Gaps = 1/206 (0%)
Frame = +3
Query: 132 ACVXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEA 311
A V G+G GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 312 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 488
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 489 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 668
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+ EGY
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIYEGYA 171
Query: 669 IGSCIKHIPIAGXNITSFIQSLLRER 746
+ I + +AG ++T ++ +L ER
Sbjct: 172 LPHAIIRLDLAGRDLTDYLMKILTER 197
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 133 bits (321), Expect = 2e-31
Identities = 74/177 (41%), Positives = 103/177 (58%), Gaps = 1/177 (0%)
Frame = +3
Query: 132 ACVXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEA 311
A V G+G GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 8 ALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 59
Query: 312 FEATGY-SVKYPVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 488
G ++KYP+ HGIV +WD ME+ + LR PE+H L+TE PLN NRE
Sbjct: 60 QSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 119
Query: 489 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAE 659
+ +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGV+H VP+ E
Sbjct: 120 MTQIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVSHTVPIYE 168
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 131 bits (316), Expect = 7e-31
Identities = 78/202 (38%), Positives = 114/202 (56%), Gaps = 6/202 (2%)
Frame = +3
Query: 150 GTGSXXLGFAGNKEPQFIIPSTIA---IKXTAKVGDQSTRRMTKAVEDLDFFIGDEAFEA 320
GTG G+AG+ P I PS + I+ + KVGD +E D +GDEA +
Sbjct: 14 GTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGD---------IEVKDLMVGDEASQL 64
Query: 321 TGY-SVKYPVRHGIVEDWDLMERYIEQCVF--KYLRAEPEDHHFLMTEPPLNTPENREYL 491
V YP+ +GIV +WD M +++ F + +P + L+TEPPLN +NRE +
Sbjct: 65 RYMLEVNYPMDNGIVRNWDDM-KHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKM 123
Query: 492 AEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVI 671
E+MFE++ G+YIA+QAVL L A+ TG+V+DSGDGVTHI PV EG+ +
Sbjct: 124 IEVMFENYQFEGVYIAIQAVLTL--------YAQGLLTGVVIDSGDGVTHICPVYEGFAL 175
Query: 672 GSCIKHIPIAGXNITSFIQSLL 737
+ + IAG +IT ++ L+
Sbjct: 176 PHLTRRLDIAGRDITKYLIKLM 197
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 127 bits (306), Expect = 1e-29
Identities = 58/76 (76%), Positives = 65/76 (85%)
Frame = +3
Query: 537 AVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGXNIT 716
A +AVLALAASW SR ERT TG V+DSGDGVTH++PVAEGYVIGSCIKHIPIAG +IT
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDIT 99
Query: 717 SFIQSLLRERXVGIPP 764
F+Q LLRER +GIPP
Sbjct: 100 FFVQQLLREREMGIPP 115
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/41 (60%), Positives = 30/41 (73%)
Frame = +3
Query: 216 IAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEAFEATGYSVK 338
IAIK +AKVG++S R K VEDLDFFIGDEA + Y+ K
Sbjct: 2 IAIKESAKVGNKSLGRSAKGVEDLDFFIGDEAIDKPSYATK 42
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 84.2 bits (199), Expect(2) = 2e-25
Identities = 41/90 (45%), Positives = 61/90 (67%)
Frame = +3
Query: 477 NREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVA 656
N + + +IMFE+FN P +Y+A+QAVL+L AS ++ TGIV+DSGDGVTH VP+
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRT--------TGIVMDSGDGVTHTVPIY 129
Query: 657 EGYVIGSCIKHIPIAGXNITSFIQSLLRER 746
EGY + I + +AG ++T ++ +L ER
Sbjct: 130 EGYALPHAIIRLDLAGRDLTDYLMKILTER 159
Score = 50.0 bits (114), Expect(2) = 2e-25
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 132 ACVXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEA 311
A V G+G GFAG+ P+ + PS VG + + + D ++GDEA
Sbjct: 7 ALVIDNGSGMCKAGFAGDDAPRAVFPSI--------VGRPRHQGVMVGMGQKDSYVGDEA 58
Query: 312 FEATGY-SVKYPVRHGIVEDWDLMER 386
G ++KYP+ HGIV +WD ME+
Sbjct: 59 QSKRGILTLKYPIEHGIVTNWDDMEK 84
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 103 bits (247), Expect = 2e-22
Identities = 54/114 (47%), Positives = 73/114 (64%)
Frame = +3
Query: 405 FKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRT 584
F LR ED L+TE PLN NRE + ++MFESFNVP +Y+AVQAV+AL AS ++
Sbjct: 2136 FDQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALYASGRT-- 2193
Query: 585 SAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGXNITSFIQSLLRER 746
TG V D GDGV+H VPV +GY + + I +AG ++T ++Q L+ ER
Sbjct: 2194 ------TGTVFDCGDGVSHTVPVYDGYWLPHATQRIDLAGRDLTHYLQRLVTER 2241
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 96.3 bits (229), Expect = 2e-20
Identities = 50/141 (35%), Positives = 78/141 (55%)
Frame = +3
Query: 342 PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREYLAEIMFESFNV 521
P++ G++EDWDL E+ ++ K ++++ H LM+E NT RE L E+MFE +NV
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 522 PGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIA 701
P ++ +VL A+ +S G+V+DSG T VPV +GYV+ I P+A
Sbjct: 63 PAFFLCKNSVLTAFANGRS--------NGLVIDSGATQTSAVPVHDGYVLQQAIVRSPLA 114
Query: 702 GXNITSFIQSLLRERXVGIPP 764
G IT+ + + E V + P
Sbjct: 115 GDFITAQCRQMFEETNVEVIP 135
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 93.5 bits (222), Expect = 2e-19
Identities = 46/103 (44%), Positives = 70/103 (67%)
Frame = +3
Query: 435 HHFLMTEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIV 614
H L+TE PLN NRE AE+ FE+FNVP L+I++QAVL+L A+ ++ TG+V
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRT--------TGVV 178
Query: 615 VDSGDGVTHIVPVAEGYVIGSCIKHIPIAGXNITSFIQSLLRE 743
+D+GDGV+H VP+ EG+ + I IAG +++ +++ LLR+
Sbjct: 179 LDAGDGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRYLRLLLRK 221
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 79.0 bits (186), Expect = 4e-15
Identities = 38/83 (45%), Positives = 56/83 (67%)
Frame = +3
Query: 498 IMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYVIGS 677
IMFE+FN P +Y+A+QAVL+L AS ++ TG+V DSGDGV+H VP+ EGY +
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRT--------TGVVFDSGDGVSHNVPIYEGYALPH 52
Query: 678 CIKHIPIAGXNITSFIQSLLRER 746
I + +AG ++T ++ L+ ER
Sbjct: 53 AILRLDLAGRDLTDYLMKLMTER 75
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 602 HWHRSRQRR-WRYSH-CSSCR-RICYWIMYKTHPYCWXKHYFIY 724
H H++R R +R+ H C C R CY Y+ H YCW +H++ Y
Sbjct: 7 HRHQNRHNRCYRHHHYCCYCHHRYCY---YRHHHYCWYRHHYHY 47
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 35.9 bits (79), Expect = 0.036
Identities = 51/186 (27%), Positives = 74/186 (39%), Gaps = 3/186 (1%)
Frame = +3
Query: 138 VXXVGTGSXXLGFAGNKEPQFIIPSTIAIKXTAKVGDQSTRRMTKAVEDLDFFIGDEAFE 317
V G S +GFA N+ P+ I P+ I AK S RR FIGD+ E
Sbjct: 237 VLDCGACSQKIGFASNQAPRSI-PNAI---FKAK----SERRK--------LFIGDQIEE 280
Query: 318 ATGYSVKY---PVRHGIVEDWDLMERYIEQCVFKYLRAEPEDHHFLMTEPPLNTPENREY 488
YS + P + G + +WD +E+ ++ Y +
Sbjct: 281 CKDYSALFYVLPFQKGFLVNWD-----VEKQIWDYT---------------FGKEGLEDA 320
Query: 489 LAEIMFESFNVPGLYIAVQAVLALAASWKSRTSAERTFTGIVVDSGDGVTHIVPVAEGYV 668
+ EI+FE +N L A L+ + S +VVD+G THIVPV G V
Sbjct: 321 MDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVC--LVVDTGYSFTHIVPVFNGKV 378
Query: 669 IGSCIK 686
I ++
Sbjct: 379 IKKAVR 384
>SB_9110| Best HMM Match : DUF321 (HMM E-Value=4.5)
Length = 199
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 602 HWHRSRQRRWRYSHCSSCRRICYWIMYKTHPYCWXKHYFIY 724
H H SR R+WR H + RRI W +Y H C + + +Y
Sbjct: 126 HDHNSRVRKWRVYH-NHNRRIRKWRVYHNH-NCRIRKWRVY 164
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 602 HWHRSRQRRWRYSHCSSCRRICYWIMYKTH 691
H H SR R+WR + +C RI W +Y H
Sbjct: 100 HGHNSRIRKWRVYYNHNC-RIRKWRVYHDH 128
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 602 HWHRSRQRRWRYSHCSSCRRICYWIMYKTH 691
H H R R+WR H +C RI W +Y H
Sbjct: 139 HNHNRRIRKWRVYHNHNC-RIRKWRVYHDH 167
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 602 HWHRSRQRRWRYSHCSSCRRICYWIMYKTHPYCWXKHYFIY 724
H H SR R+WR H + RI W +Y H C + + +Y
Sbjct: 87 HDHNSRIRKWRVYHGHN-SRIRKWRVYYNH-NCRIRKWRVY 125
>SB_15553| Best HMM Match : SCP (HMM E-Value=1.1e-16)
Length = 141
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 450 TEPPLNTPENREYLAEIMFESFNVPGLYIAVQAVLA 557
T PP N P E +A++M++S + G+ I+ V+A
Sbjct: 88 TNPPANAPAGTEEVAQLMWQSTSAVGVGISGNVVVA 123
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = -3
Query: 482 SVFWSVERRLGH*EMMIFGFRTEILKHALFDVPFH*IPVFYDTVAHRILYRVSCGFKSF 306
SVF +R+ I+ ++I H DVP +PVF D + R Y ++ G K +
Sbjct: 70 SVFRRPRKRVDSFSHAIYEAASKIFLHLKGDVPSSQLPVFDDDLERRRAYSMAFGAKRY 128
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 341 SCAPRYRRRLGFNGKVHRTVRV*VSPCGTRRSSFLN 448
+C PRYR GFN + RTV V PC S ++
Sbjct: 2331 TCTPRYR---GFNCTILRTVCTDVQPCDKGNCSMIS 2363
>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
Length = 957
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +3
Query: 606 GIVVDSGDGVTHIVPVAEGYVIGSCIKHIPIAGXNITSFIQSLLRERXVGIPP 764
G+V+++GD V +VP+A V+G +PIAG ++ + L + +G+ P
Sbjct: 776 GVVLNAGDVVLGVVPIAGDVVLGV----VPIAG-DVVLGVVPLAGDVVLGVVP 823
>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1325
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -3
Query: 365 FYDTVAHRILYRVSCGFKSFIT--DEKIQIFDSLSHPPSTLIA 243
F T I Y + C F +F D K IFD SHP +++A
Sbjct: 1192 FDSTDYQPIEYNIDCKFDTFSATIDVKKTIFDLQSHPTDSIVA 1234
>SB_17350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2956
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +2
Query: 539 CTSRSCFGCVMEVTYVC*THLHWHRSRQRRWRYSHCSSCRRI 664
C S F V+E Y+C HW +R +H C R+
Sbjct: 2549 CNSGYGFSTVVEKMYMCSVSDHWIHARMSVDGLAHFPDCSRV 2590
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,406,439
Number of Sequences: 59808
Number of extensions: 433552
Number of successful extensions: 1078
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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