Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F11
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    89   5e-19
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   5.5  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.3  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.7  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 89.0 bits (211), Expect = 5e-19
 Identities = 47/86 (54%), Positives = 55/86 (63%)
 Frame = +2

Query: 92  SKFAQAAANVXHLKALPTDAQLLNLYAHFKQATVGDADPANXPGLLDLKGKAKFDAWHKL 271
           S F QAAA+V  LK  P   +LL LYA FKQATVGD +    PGLLDLKGK K++AW +L
Sbjct: 3   STFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEEL 61

Query: 272 AGXSXEDAQKAYIEIVEGLIASIGLK 349
            G S EDA   YI  V+ L    G+K
Sbjct: 62  KGKSKEDAASEYISFVDELKTKYGMK 87


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 65   HICSICLSKSKFAQAAA 115
            H+C +CLS+S+  +AA+
Sbjct: 1266 HVCKLCLSRSRSLRAAS 1282


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 479 HFCLKCFFFKNTNSY 523
           H+CLKCF  K   SY
Sbjct: 400 HYCLKCFQVKPPRSY 414


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 68   ICSICLSKSKFAQAAANVXHLKALPTDAQLLNLYAHFKQ 184
            +C  CL    F+Q AA++     +  DA LLN+Y +F+Q
Sbjct: 3294 LCLKCLLS--FSQHAASLRICHGI--DAMLLNIYHYFEQ 3328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,012
Number of Sequences: 5004
Number of extensions: 45189
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)