Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F11
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369...    53   2e-07
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468...    52   4e-07
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847...    52   5e-07
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86...    49   4e-06
03_02_0952 + 12666750-12666777,12666965-12667185,12669464-126696...    30   1.4  
11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160     28   5.7  

>08_01_0417 -
           3692247-3692329,3692442-3692504,3693233-3693350,
           3694084-3694095
          Length = 91

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 30/78 (38%), Positives = 42/78 (53%)
 Frame = +2

Query: 98  FAQAAANVXHLKALPTDAQLLNLYAHFKQATVGDADPANXPGLLDLKGKAKFDAWHKLAG 277
           F Q A     L    ++   L LY  +KQATVGD + A  PG+   + +AK+DAW  + G
Sbjct: 7   FEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTAR-PGIFAQRDRAKWDAWKAVEG 65

Query: 278 XSXEDAQKAYIEIVEGLI 331
            S E+A   YI  V+ L+
Sbjct: 66  KSKEEAMSDYITKVKQLL 83


>04_04_1623 -
           34846056-34846223,34846547-34846644,34846738-34846829,
           34847096-34847202,34847385-34847490,34848108-34848547
          Length = 336

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 31/76 (40%), Positives = 42/76 (55%)
 Frame = +2

Query: 101 AQAAANVXHLKALPTDAQLLNLYAHFKQATVGDADPANXPGLLDLKGKAKFDAWHKLAGX 280
           A  AA+     ++P  AQL  LY  +K AT G    A  P  L LK +AK++AWHKL   
Sbjct: 99  AFVAASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAM 156

Query: 281 SXEDAQKAYIEIVEGL 328
             E+A + YI +V+ L
Sbjct: 157 PTEEAMQKYITVVDEL 172


>03_05_0107 -
           20883353-20883627,20883739-20883801,20884608-20884725,
           20885012-20885023
          Length = 155

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 29/77 (37%), Positives = 42/77 (54%)
 Frame = +2

Query: 98  FAQAAANVXHLKALPTDAQLLNLYAHFKQATVGDADPANXPGLLDLKGKAKFDAWHKLAG 277
           F + A  V  L    ++   L LY  +KQATVGD + +  PG+   + +AK+DAW  + G
Sbjct: 7   FEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVNTSR-PGIFAQRDRAKWDAWKAVEG 65

Query: 278 XSXEDAQKAYIEIVEGL 328
            S E+A   YI  V+ L
Sbjct: 66  KSKEEAMSDYITKVKQL 82


>06_01_0108 -
           860080-860162,860276-860338,860857-860974,861481-861492
          Length = 91

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 28/81 (34%), Positives = 42/81 (51%)
 Frame = +2

Query: 89  KSKFAQAAANVXHLKALPTDAQLLNLYAHFKQATVGDADPANXPGLLDLKGKAKFDAWHK 268
           + +F + A     L    ++   L LY  +KQATVG       PG+ +LK + K+DAW  
Sbjct: 4   QEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVTTGR-PGIFNLKDRYKWDAWKA 62

Query: 269 LAGXSXEDAQKAYIEIVEGLI 331
           + G S E+A   YI  V+ L+
Sbjct: 63  VEGKSKEEAMADYITKVKQLL 83


>03_02_0952 +
           12666750-12666777,12666965-12667185,12669464-12669649,
           12670147-12670212,12670335-12670427,12670528-12670659,
           12670794-12670895,12670993-12671070,12671148-12671219,
           12672185-12672292,12672368-12672465,12672904-12672964,
           12673058-12673120,12673228-12673284,12673571-12673729,
           12674310-12674441,12674516-12674602,12674667-12674738,
           12675899-12675985,12676052-12676427,12676727-12676788,
           12676946-12677014,12677096-12677142,12677189-12677342,
           12677874-12677999
          Length = 911

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 219 GXLAGSASPTVACLKWAYKLRSWASVGRAFRCXTLAAAW 103
           G ++GS+S ++ C+       SW   GR + C  L+ AW
Sbjct: 6   GAVSGSSSSSLECVSSCRT--SWRGGGRPYECSVLSCAW 42


>11_06_0453 + 23781803-23781814,23782700-23782781,23783334-23784160
          Length = 306

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 84  SPSQNLPKPQPTXST*KLFQLMPNSLTCMPISNRPQ 191
           SP + +P PQPT       ++ P  +TC P+  +P+
Sbjct: 170 SPHKEMPLPQPT-----TMEMPPPPVTCTPVVEKPR 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,654,528
Number of Sequences: 37544
Number of extensions: 289214
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)