Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F11
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               53   2e-07
SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.63 
SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 31/72 (43%), Positives = 39/72 (54%)
 Frame = +2

Query: 98  FAQAAANVXHLKALPTDAQLLNLYAHFKQATVGDADPANXPGLLDLKGKAKFDAWHKLAG 277
           FAQA   V  LK L  D Q L  Y  FKQAT G    +  PG  D+ GKAK+++WH+   
Sbjct: 17  FAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCKTSR-PGFWDIVGKAKWESWHQHGK 74

Query: 278 XSXEDAQKAYIE 313
              E A K Y++
Sbjct: 75  MPQEKAMKIYVQ 86


>SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 658 DXVRVYF*NMISKRTQVISLLFNIML*HPWKYRSLM*EHDNFMK 527
           D VR++F N+  + T    +L       P  Y+++   HDNFMK
Sbjct: 192 DAVRIFFPNLFKQMTSFDRILTRFY--EPASYKAMCESHDNFMK 233


>SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 658 DXVRVYF*NMISKRTQVISLLFNIML*HPWKYRSLM*EHDNFMK 527
           D VR++F N+  + T    +L       P  Y+++   HDNFMK
Sbjct: 245 DAVRIFFPNLFKQVTSFDRILTRFY--EPASYKAMCESHDNFMK 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,545
Number of Sequences: 59808
Number of extensions: 325926
Number of successful extensions: 539
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)