Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F10
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)        39   0.003
SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.018
SB_49420| Best HMM Match : DAP10 (HMM E-Value=1.5)                     31   0.89 
SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)                     29   4.8  
SB_49270| Best HMM Match : RVT_1 (HMM E-Value=1.4)                     29   4.8  
SB_7931| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-26)                  28   6.3  
SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)                 28   6.3  

>SB_14698| Best HMM Match : E1_DerP2_DerF2 (HMM E-Value=4.1e-31)
          Length = 167

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
 Frame = +1

Query: 133 AFVCLALAAVVSATNVRQCPGKSVPE-LSKAVQL--HECIKLPCVLKKNTDQHIVIKFTP 303
           + V L+L A  S+T  R+   K+      K ++L    C + PC   K +++     F P
Sbjct: 5   SLVILSLLAFASSTQGRKISFKACESPAGKLIELDLEPCEEEPCTFHKGSNETCKATFVP 64

Query: 304 EKDVLDLKNSVSAKLFEIDLPFIGVDGTSVCDKIHTEDDQKSGCPLKAGTNYIYKDTFPI 483
            + V      V   +  + +PF  +   +VC+    +      CP+ AG +        +
Sbjct: 65  NELVSSATIEVFGIIGGVQVPF-PLKNPNVCENHGVK------CPINAGDSATLDLNIYV 117

Query: 484 LSIYPSIQAEVTWALKAEDKDVI 552
            ++YPS++  + + LK  D  ++
Sbjct: 118 SNLYPSLKLIIKFELKGGDNKLV 140


>SB_5273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 4/153 (2%)
 Frame = +1

Query: 133 AFVCLALAAVVSATNVRQCPGKSVPELSKAVQLHECIKLPCVLKKNTDQHIVIKFTPEKD 312
           AF  + + +       R C G    E+   + +  C   PCVLK+ T     + F P +D
Sbjct: 10  AFAAMLVPSSTKTIKYRDC-GSQEGEIV-GMDISPCDSEPCVLKRGTSVDGSLTFIPHED 67

Query: 313 VLDLKNSVSAKLFEIDLPFIGVDGTSVCDKIHTEDDQKSG--CPLKAGTNYIYKDTFPIL 486
           +   K S  A + ++ LP            I ++  Q  G  CP+ +G   ++K    I 
Sbjct: 68  LKRAKLSAHAIIDKLPLPL----------PIPSDACQGYGLSCPVDSGVKSMFKIHQAIE 117

Query: 487 SIYPSIQAEVTWALKAEDKD--VICFRVPVKIS 579
           S +P     +  A+   D    V CF V ++I+
Sbjct: 118 SEFPVGNLTLKAAVTDSDTSQVVFCFEVDLEIA 150


>SB_49420| Best HMM Match : DAP10 (HMM E-Value=1.5)
          Length = 182

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +1

Query: 127 TSAFVCLALAAVVSATNVRQCPGK-SVPELSKAVQLHECIKLPCVLKKNTDQHIVIKFT 300
           +  F   A+AA    T V   P   +VP+  +   +   IK+PC    N D+ I IK T
Sbjct: 108 SQTFATTAVAASTWGTTVTPVPASMAVPQKGQGHGVCHQIKVPCSTPANIDEQIYIKAT 166


>SB_52903| Best HMM Match : DUF1126 (HMM E-Value=0)
          Length = 1452

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = +1

Query: 313 VLDLKNSVSAKLFEIDLPFIGVDGTSVCDKIHTEDDQKSGCPLKAGTNYIYKDTFPILSI 492
           V D ++S+  ++    L +  VD T    ++HT +D +   P+      + KD   + S 
Sbjct: 321 VWDDRDSMFGEMRPCILHYYLVDDTVEIREVHTPNDGRDPFPVLVCRQKLAKDRTDVESS 380

Query: 493 YPSIQAEVT 519
           +PS+  E++
Sbjct: 381 FPSVVLELS 389


>SB_49270| Best HMM Match : RVT_1 (HMM E-Value=1.4)
          Length = 594

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 286 VIKFTPEKDVLDLKNSVSAKLFEIDLPFIGVDGTSVCDKIHTEDDQKSGCPLKAG---TN 456
           V+ +  E+ V D+   V A+  EID  F+ ++G S  +       QK  CPL      T+
Sbjct: 22  VLVYQGEESVADVGAGVLAEGREIDNLFVCLNGDSESNNNTCNCRQKDTCPLDGNCLQTS 81

Query: 457 YIYKDT 474
            IY+ T
Sbjct: 82  VIYQAT 87


>SB_7931| Best HMM Match : 7tm_1 (HMM E-Value=8.2e-26)
          Length = 260

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 452 PTTSIKTPFLFSVFTHQFKR 511
           P  S   PFL+++FT QFK+
Sbjct: 222 PLNSCANPFLYAIFTSQFKK 241


>SB_52582| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-39)
          Length = 587

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 452 PTTSIKTPFLFSVFTHQFKR 511
           P  S   PFL+++FT QFK+
Sbjct: 458 PLNSCANPFLYAIFTSQFKK 477


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,261,657
Number of Sequences: 59808
Number of extensions: 379867
Number of successful extensions: 797
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)