Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F08
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.2  
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo...    25   9.8  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   9.8  

>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 336 RHDMYVFNFFIKTLTTTNSIKYL 404
           +HD  +F  F+K +T+ N  +YL
Sbjct: 78  KHDTMIFTLFVKYITSLNHPEYL 100


>SPAC12G12.05c |taf9||transcription initiation factor
           Taf9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 315 IRLITTRHRLRQTLDKNSKIKRKMERGQTIYTSV 214
           ++L+T  HR  Q L ++S++  +  RGQ    SV
Sbjct: 38  LQLLTFAHRYTQQLIQDSQVYAEHSRGQNAPISV 71


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = +2

Query: 41  SSYACSKKRLFQYYKHT 91
           ++YAC++K+L ++ +HT
Sbjct: 213 AAYACAEKQLLEFVEHT 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,640
Number of Sequences: 5004
Number of extensions: 36812
Number of successful extensions: 64
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)