Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F08
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)        28   7.9  
SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)         28   7.9  

>SB_35882| Best HMM Match : Neur_chan_memb (HMM E-Value=8.8e-26)
          Length = 360

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 34  LGLFICMQ*KAIISILQTYTPILFICIXEXGQF-VPLSSGSCTSFVVEVKKSTT 192
           +G  + M+ K++   +    P + IC+     F +P+  G   SFV+ V  S T
Sbjct: 83  VGFIVNMKRKSLFYFVNLLLPNILICLLAFFSFFIPVECGERISFVITVLLSMT 136


>SB_7484| Best HMM Match : Neur_chan_memb (HMM E-Value=1.3e-10)
          Length = 384

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 34  LGLFICMQ*KAIISILQTYTPILFICIXEXGQF-VPLSSGSCTSFVVEVKKSTT 192
           +G  + M+ K++   +    P + IC+     F +P+  G   SFV+ V  S T
Sbjct: 147 VGFIVNMKRKSLFYFVNLLLPNILICLLAFFSFFIPVECGERISFVITVLLSMT 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,819
Number of Sequences: 59808
Number of extensions: 246412
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)