Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F06
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 213 2e-56
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 209 4e-55
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 118 1e-27
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 33 0.055
SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr... 30 0.39
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.1
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 27 2.7
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 3.6
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 27 3.6
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2... 27 3.6
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar... 26 4.8
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.8
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 4.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 4.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 4.8
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 4.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 26 6.3
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 8.3
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.3
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 213 bits (520), Expect = 2e-56
Identities = 109/196 (55%), Positives = 138/196 (70%), Gaps = 6/196 (3%)
Frame = +3
Query: 153 ALIPVINKLQXVFNTVGA-DAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRR 329
+LI V+N+LQ F+TVG + I LPQI V+ +QSSGKSSV+E++VGR FLPRG GIVTRR
Sbjct: 4 SLIKVVNQLQEAFSTVGVQNLIDLPQITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRR 63
Query: 330 PLILQLVYSPK-EGKEHRSAEEGT----LNLEEWGKFLHTKDKIYTNFEEIRQEIERETD 494
PL+LQL+ P GK + + N EWG+FLH + + FE+IR+EI RET+
Sbjct: 64 PLVLQLINRPSASGKNEETTTDSDGKDQNNSSEWGEFLHLPGQKFFEFEKIREEIVRETE 123
Query: 495 RMAGSNKGISPEPINLKIYSTTVVNLTLVDLPGITKVPIGDQPEDIXNXIXNLIIKYISN 674
G N GIS PI L+IYS V+ LTLVDLPG+TKVP+GDQP DI I +++KYIS
Sbjct: 124 EKTGKNVGISSVPIYLRIYSPHVLTLTLVDLPGLTKVPVGDQPRDIEKQIREMVLKYISK 183
Query: 675 PNSIILXVTAANTDMA 722
N+IIL V AANTD+A
Sbjct: 184 NNAIILAVNAANTDLA 199
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 209 bits (510), Expect = 4e-55
Identities = 112/215 (52%), Positives = 150/215 (69%), Gaps = 24/215 (11%)
Frame = +3
Query: 147 MEALIPVINKLQX-VFNTVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVT 323
ME LIP++N+LQ V+NT+G+D + LP I V+G+QS GKSSV+E++VG+ FLPRG GIVT
Sbjct: 1 MEQLIPLVNQLQDLVYNTIGSDFLDLPSIVVVGSQSCGKSSVLENIVGKDFLPRGTGIVT 60
Query: 324 RRPLILQLVYSPKEGK-------------EHRSA----------EEGTLNLEEWGKFLHT 434
RRPLILQL+ ++ K E SA EE + +E++ +FLH
Sbjct: 61 RRPLILQLINLKRKTKNNHDEESTSDNNSEETSAAGETGSLEGIEEDSDEIEDYAEFLHI 120
Query: 435 KDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIYSTTVVNLTLVDLPGITKVPIG 614
D +T+ ++R EIE ET R+AG+NKGI+ PINLKIYST V+NLTL+DLPG+TK+P+G
Sbjct: 121 PDTKFTDMNKVRAEIENETLRVAGANKGINKLPINLKIYSTRVLNLTLIDLPGLTKIPVG 180
Query: 615 DQPEDIXNXIXNLIIKYISNPNSIILXVTAANTDM 719
DQP DI +LI++YIS PNSIIL V+ AN D+
Sbjct: 181 DQPTDIEAQTRSLIMEYISRPNSIILAVSPANFDI 215
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 118 bits (283), Expect = 1e-27
Identities = 75/189 (39%), Positives = 109/189 (57%)
Frame = +3
Query: 156 LIPVINKLQXVFNTVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPL 335
+I + N LQ + + A+ LP I V+G+QSSGKSSV+E++VG FLP+G +VTRRP+
Sbjct: 244 MIEIRNILQDIQDN--NSAVTLPSIVVIGSQSSGKSSVLEAIVGHEFLPKGSNMVTRRPI 301
Query: 336 ILQLVYSPKEGKEHRSAEEGTLNLEEWGKFLHTKDKIYTNFEEIRQEIERETDRMAGSNK 515
L LV+S + G + + GK T+F +I Q I + + S++
Sbjct: 302 ELTLVHSADTAIPY-----GEFSGVQLGKI--------TDFSKI-QHILTDLNMAVPSSQ 347
Query: 516 GISPEPINLKIYSTTVVNLTLVDLPGITKVPIGDQPEDIXNXIXNLIIKYISNPNSIILX 695
G+ PI L IY++ + NL+L+DLPG ++ DQP D+ I L KYI PN IIL
Sbjct: 348 GVDDNPIRLTIYASHIPNLSLIDLPGYIQIHSEDQPADLDMKISKLCEKYIREPN-IILA 406
Query: 696 VTAANTDMA 722
V AA+ D+A
Sbjct: 407 VCAADVDLA 415
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 32.7 bits (71), Expect = 0.055
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +3
Query: 171 NKLQXVFNTVGA-DA-IQLPQIAVLGTQSSGKSSVIESLVGRSF 296
N+L +VG DA +AVLG+QS+GKS+++ +L G SF
Sbjct: 21 NELPKFMQSVGLLDAGFNYHVVAVLGSQSTGKSTLLNNLFGTSF 64
>SPAC16E8.04c |||chorismate mutase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 29.9 bits (64), Expect = 0.39
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +3
Query: 339 LQLVYSPKEGKEHRSAEEGTLNLEEW-GKF----LHTKDKIY 449
L+ P+ K ++S +EG LNLE + G F LH ++K+Y
Sbjct: 29 LERAQFPRNEKVYKSGKEGCLNLENYDGSFLNYLLHEEEKVY 70
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 471 QEIERETDRMAGS-NKGISPEPINLKIYSTTVVNLTLVDLPGITKVP 608
+E+E GS + + P+P N ++ ++LTL PG +P
Sbjct: 346 KELEAMHFEQPGSVTEKLFPDPTNFEVIDNVSIDLTLTGFPGAHGIP 392
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 27.1 bits (57), Expect = 2.7
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 228 IAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLV 350
+A+LG ++GKSS+I L R P T R I LV
Sbjct: 242 VAILGPSNAGKSSLINLLANRRISIVSPQSGTTRDAIEVLV 282
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 3.6
Identities = 18/72 (25%), Positives = 38/72 (52%)
Frame = +3
Query: 363 EGKEHRSAEEGTLNLEEWGKFLHTKDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINL 542
E K +S E+ T+ +EE KFL K+K ++++ IE + + + +S I+
Sbjct: 424 EKKTRQSYEQQTVKIEEQLKFLLNKEK------KLKKSIEALSFEKSEAENSLSSHDIDS 477
Query: 543 KIYSTTVVNLTL 578
+ ++ + +L+L
Sbjct: 478 QKLNSEIADLSL 489
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 234 VLGTQSSGKSSVIESLVGRSFLPRG 308
V+G SGKSS+I +L+G L +G
Sbjct: 646 VIGPTGSGKSSLISALLGELSLNKG 670
>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 228 IAVLGTQSSGKSSVIESLVGRS 293
+ V+G + GKSSVI +LV RS
Sbjct: 272 VGVIGYPNVGKSSVINALVNRS 293
>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
Gda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -3
Query: 442 LSFVCRN-FPHSSRLRVPSSAERCSLPSFGL*TNWRMRGRRVTIPGPRGRNERP 284
++F+ N FP SS +PSS + L + +R G V + P+ E P
Sbjct: 23 VTFILWNGFPGSSNRPLPSSNDEFHYEDIELPSGYRSEGEVVDLLNPKDELEEP 76
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 601 FVIPGRSTKVRLTTVVEYIFKFIGSGDIPL 512
FVI T V+ +EY+F+ SG+ P+
Sbjct: 1349 FVIANPFTSVKHEVALEYLFEHYPSGEFPI 1378
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 228 IAVLGTQSSGKSSVIESLVGRSFLP 302
+ VLG SGKS+++ +L+ R P
Sbjct: 98 VLVLGESGSGKSTLVNTLLNRDVYP 122
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 228 IAVLGTQSSGKSSVIESLVGR 290
+AV+G +GKS++I+SLV R
Sbjct: 77 VAVMGPPGTGKSTLIKSLVRR 97
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/90 (23%), Positives = 36/90 (40%)
Frame = +3
Query: 246 QSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYSPKEGKEHRSAEEGTLNLEEWGKF 425
++ GK +E+ + R+ L +R ++ Y P G E EEG +
Sbjct: 255 RTHGKVIKLENCIRRTALQTVKNKYAQRCQFFKVDYVPLNGGEEEEEEEGEEKEDAQNIK 314
Query: 426 LHTKDKIYTNFEEIRQEIERETDRMAGSNK 515
D ++ F E Q+ + D+ G NK
Sbjct: 315 ERMVDFCFSKFMEKNQQRREQQDK--GENK 342
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 4.8
Identities = 21/90 (23%), Positives = 36/90 (40%)
Frame = +3
Query: 246 QSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYSPKEGKEHRSAEEGTLNLEEWGKF 425
++ GK +E+ + R+ L +R ++ Y P G E EEG +
Sbjct: 255 RTHGKVIKLENCIRRTALQTVKNKYAQRCQFFKVDYVPLNGGEEEEEEEGEEKEDAQNIK 314
Query: 426 LHTKDKIYTNFEEIRQEIERETDRMAGSNK 515
D ++ F E Q+ + D+ G NK
Sbjct: 315 ERMVDFCFSKFMEKNQQRREQQDK--GENK 342
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 144 IMEALIPVINKLQXVFNTVGADAIQLPQIAVL 239
++ A++PVI++L N+VG + LP+ L
Sbjct: 680 MISAIVPVISRLYDSMNSVGDGSQALPKYVAL 711
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 225 QIAVLGTQSSGKSSVIESLVG 287
++A+LG +GKS++I+ L+G
Sbjct: 721 RVAILGPNGAGKSTLIKVLIG 741
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 159 IPVINKLQXVFNTVGADAIQLPQIAVLGTQSSGK 260
IP+ N Q + +D LPQ + L SSGK
Sbjct: 244 IPLSNASQQSYINHSSDGASLPQSSFLNFNSSGK 277
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 363 EGKEHRSAEEGTLNLEEWGKFLHTKDKIYTNFEEIRQEIERETDRMAGSNK 515
E E + E+G L+ +E + L D F+++ +++ERE+ G NK
Sbjct: 910 ENGEEENDEKGELDDDELNEILARGDDELRLFKQMTEDLERESP--YGKNK 958
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,084
Number of Sequences: 5004
Number of extensions: 47825
Number of successful extensions: 183
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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