Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_F06
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.) 166 5e-55
SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0) 200 1e-51
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 35 0.077
SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05) 31 0.95
SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023) 29 2.9
SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 29 5.1
SB_5491| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09) 28 8.9
SB_4104| Best HMM Match : Fzo_mitofusin (HMM E-Value=0) 28 8.9
>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 166 bits (403), Expect(2) = 5e-55
Identities = 77/105 (73%), Positives = 89/105 (84%)
Frame = +3
Query: 411 EWGKFLHTKDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIYSTTVVNLTLVDLP 590
EWGKFLH K+KI+ +F IR+EIERETDR+ GSNKGIS EPINLKIYS V+NLTLVDLP
Sbjct: 140 EWGKFLHLKEKIFRDFNGIREEIERETDRVTGSNKGISSEPINLKIYSPKVLNLTLVDLP 199
Query: 591 GITKVPIGDQPEDIXNXIXNLIIKYISNPNSIILXVTAANTDMAT 725
G+TKVP+GDQP DI I +LI++YISNPNSIIL VT AN D+AT
Sbjct: 200 GVTKVPVGDQPLDIEQQIRHLILQYISNPNSIILAVTPANIDLAT 244
Score = 66.9 bits (156), Expect(2) = 5e-55
Identities = 46/102 (45%), Positives = 56/102 (54%), Gaps = 21/102 (20%)
Frame = +3
Query: 147 MEALIPVINKLQXVFNTVGADAIQLPQIAVLGTQ---------------------SSGKS 263
ME LIPVINKLQ VFNTVG+++IQLPQI V+G Q +
Sbjct: 1 MEQLIPVINKLQDVFNTVGSESIQLPQIVVVGAQFIYFRLYAFLSMMQMAENENIARHTG 60
Query: 264 SVIESLVGRSFLPRGPGIVTRRPLILQLVYSPKEGKEHRSAE 389
++ S FL G G+VTRRPLILQLV+ P KE + E
Sbjct: 61 TLTNSHTKEMFL--GSGVVTRRPLILQLVHVPPRAKEKKINE 100
>SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)
Length = 498
Score = 200 bits (487), Expect = 1e-51
Identities = 101/193 (52%), Positives = 142/193 (73%), Gaps = 1/193 (0%)
Frame = +3
Query: 147 MEALIPVINKLQXVFNTVG-ADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVT 323
ME LIP++NK+Q F ++G + I LPQIAV+G+QS+GKSSV+E+ VG+ FLPRG GIVT
Sbjct: 6 MEDLIPIVNKIQDAFASIGYSSMIDLPQIAVVGSQSAGKSSVLENFVGKDFLPRGSGIVT 65
Query: 324 RRPLILQLVYSPKEGKEHRSAEEGTLNLEEWGKFLHTKDKIYTNFEEIRQEIERETDRMA 503
RRPLILQL P + E+ +FLH ++K +T+F E+++EI ETDR+
Sbjct: 66 RRPLILQL--QPSKS--------------EYAEFLHCRNKKFTDFGEVQKEIVAETDRVT 109
Query: 504 GSNKGISPEPINLKIYSTTVVNLTLVDLPGITKVPIGDQPEDIXNXIXNLIIKYISNPNS 683
G NKGIS PINL++YS +V++LTLVDLPG+TKVP+GDQP DI I ++++++I+ N
Sbjct: 110 GGNKGISNIPINLRVYSPSVLSLTLVDLPGMTKVPVGDQPADIEFQIRSMLLEFITKENC 169
Query: 684 IILXVTAANTDMA 722
+IL V+ AN+D+A
Sbjct: 170 LILAVSPANSDLA 182
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 34.7 bits (76), Expect = 0.077
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 228 IAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYSPKEGKEHRSAE-EGTLN 404
I V+G +SGKSS+I L+G ++LP T R I+++ YS E + E
Sbjct: 95 ILVVGQTNSGKSSLINELLGGTYLPTAEIPCTSR--IVRICYSDNNYVEVQGPNGECVQG 152
Query: 405 LEEWGKFLHTKDKIYTNFEEIRQEIE 482
+ +GK +D+I + ++ R + E
Sbjct: 153 KQSFGKKRIPRDEIALDDDKKRSDAE 178
>SB_42510| Best HMM Match : MMR_HSR1 (HMM E-Value=5.3e-05)
Length = 202
Score = 31.1 bits (67), Expect = 0.95
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 195 TVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYS 356
++ D + +P + V+G Q+ GKS+ + L+ +LP T R I+++ YS
Sbjct: 55 SLSKDGLFIPSVIVIGNQNCGKSTFLNVLLKGKYLPVHENPCTSR--IVRISYS 106
>SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 459 EEIRQEIERETDRMAGSNKGISPEPINLKIYSTTVVNLTLVDLP 590
+++R E+E R + +SPE I++ + + + LVDLP
Sbjct: 112 KDLRHEVELRMKRSVKQGQTVSPEVISMTVKGPGLHRMVLVDLP 155
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 192 NTVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFL 299
+TV D +L ++A++G +SGKS++I LVG +
Sbjct: 31 STVAPDT-KLLKVAIIGEPNSGKSTLINQLVGEKIV 65
>SB_14169| Best HMM Match : YTH (HMM E-Value=0.00023)
Length = 906
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Frame = +3
Query: 195 TVGADAIQLPQIAVLGTQSSGKSSVIESLVGRSFLPRGPG----IVTRRPLILQLVYSPK 362
T + I+ P SS +E + G FLP PG + R P+ Q ++
Sbjct: 745 TTSHEDIRAPAEGTAPKSSSAFGGSVEDIAGEDFLPVDPGCYYSVALRCPINSQRIFWAS 804
Query: 363 EGKEHRSAEEGTLNLEEWGKFLHTKDKIYTN 455
+ ++ EE L ++ K + TN
Sbjct: 805 LKRTNQQNEEYNQFLSNLKSYMEAKGESLTN 835
>SB_20528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 637
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 417 GKFLHTKDKIYTNFEEIRQEIERETDRMAGSNKGISPEPINLKIYSTTVVNL 572
G L T++K+ EIR+E E ++ +P+P L + +T +V+L
Sbjct: 378 GPSLETREKMKKRLREIREEFGSEVFEVSDVVYPFAPDPNLLSVGNTVLVDL 429
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 435 KDKIYTNFEEIRQEIERETDRMAGSNKGIS 524
KDK+YT F++I Q + + D + + IS
Sbjct: 1819 KDKLYTKFQKISQGLRNDLDAVVAEREEIS 1848
>SB_5491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 219 LPQIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVTRRPLILQLVYSPKE 365
LP LGT+ + + PR PGI TR P I ++ SP++
Sbjct: 200 LPLSKRLGTRRFLPKLMASDGLAAKLRPRNPGITTRLPEIKRIFASPRQ 248
>SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09)
Length = 557
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 62 SKNSRFVTAQPTCLXSXGICKSASXFLNN 148
S N+R++ P C S +C S S L +
Sbjct: 288 SINARYIEVPPYCFYSTAVCNSGSSLLTS 316
>SB_4104| Best HMM Match : Fzo_mitofusin (HMM E-Value=0)
Length = 613
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 225 QIAVLGTQSSGKSSVIESLVGRSFLPRGPGIVT 323
++A G S+GKS+V+ +++ LP G G T
Sbjct: 97 KVAFFGRTSNGKSTVVNAMLQDRILPMGIGHTT 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,926,473
Number of Sequences: 59808
Number of extensions: 346888
Number of successful extensions: 1134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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