Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F05
         (754 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   8.0  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   8.0  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   8.0  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 335 KIKLICCEFCDFLGSAKIQSAPPLVLCLRVE--LSDVECPY 219
           KIK   C+ CDF+   K++      + +R +  L+  +CP+
Sbjct: 198 KIKTFKCKQCDFVAITKLEQWNHSKVHIREDKRLTCPKCPF 238


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 218 KLQNVQNNFE 189
           K+ N+QNNFE
Sbjct: 57  KIYNIQNNFE 66


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 217 LYGHSTSDSSTLKHNTSGGA 276
           LYG+S S  S+++   SGGA
Sbjct: 218 LYGNSMSVDSSVQSWLSGGA 237


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 367 PRTLRTSQRTYLS*PCYRFGSLMTSKS 447
           P +L T QRT  S P Y   S+MTS S
Sbjct: 81  PSSLPT-QRTSTSNPTYSSRSVMTSCS 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,607
Number of Sequences: 336
Number of extensions: 3215
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)