Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F05
         (754 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201...    33   0.24 
03_05_1161 - 30831043-30831151,30831641-30831759,30831880-308319...    29   5.2  
03_02_0900 - 12262149-12262565,12262924-12263061,12263387-122634...    28   9.2  
02_05_0629 + 30475493-30475674,30477091-30477125,30477566-304777...    28   9.2  
02_02_0581 + 11770511-11770527,11770754-11771612,11771652-117717...    28   9.2  

>02_01_0301 +
           2011707-2015423,2016982-2017182,2017670-2017786,
           2018030-2018122
          Length = 1375

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +3

Query: 384 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKR 563
           +  N   + V    KLD    + KH T++I    TE++P IQ  L  LQ   K ++ +KR
Sbjct: 243 VQNNFHVIWVCMSHKLD----IRKHTTEVIESLATEETPKIQN-LDTLQRKLKNLLLEKR 297

Query: 564 D 566
           +
Sbjct: 298 E 298


>03_05_1161 -
           30831043-30831151,30831641-30831759,30831880-30831906,
           30832117-30832158,30832293-30832392,30832481-30832545,
           30832619-30832694,30832878-30832939,30833248-30833253,
           30834704-30834782,30834890-30834957
          Length = 250

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/83 (27%), Positives = 43/83 (51%)
 Frame = +3

Query: 363 MAENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHK 542
           M E++E +  N+ EL  L  +  + +K +    ++++   I E    +QR  K+LQE +K
Sbjct: 122 MGEDLESL--NLKELQQLEQQLENSLKHIRSRKSQLMLESINE----LQRKEKSLQEENK 175

Query: 543 RIIFQKRDSVEVEYIFTTEKKSS 611
            +  QK    +V++  T  + SS
Sbjct: 176 LVEKQKVQKQQVQWDQTQPQTSS 198


>03_02_0900 -
           12262149-12262565,12262924-12263061,12263387-12263446,
           12263557-12263619,12264181-12264243,12264420-12264482,
           12265076-12265153,12265673-12266080
          Length = 429

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 465 KIINHPITEQSPSIQRYLKNLQETHKRIIFQ 557
           ++IN  +T Q  S++  L  L+ET+K ++ Q
Sbjct: 215 EVINDALTHQETSLKERLSGLEETNKVLLVQ 245


>02_05_0629 +
           30475493-30475674,30477091-30477125,30477566-30477724,
           30478558-30478568,30479669-30479730,30480166-30480265,
           30480495-30480770
          Length = 274

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
 Frame = +3

Query: 492 QSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQ----RQRFNSLPVSEVPE 659
           ++ S+++ L NLQE+HK+++ ++   + V  +   E +  +     R R  SL   E  E
Sbjct: 134 EAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKGSLIHQENIE 193

Query: 660 LLKNEFIAVENARQVHICTDCDVEIELND 746
           L ++  +  +   +++    C + +E  D
Sbjct: 194 LSRSLNVMSQQKLELYNKVRCKILLETCD 222


>02_02_0581 +
           11770511-11770527,11770754-11771612,11771652-11771749,
           11772903-11773631,11775159-11775231,11775698-11776066,
           11777009-11777038
          Length = 724

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/61 (34%), Positives = 32/61 (52%)
 Frame = +3

Query: 369 ENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRI 548
           EN +D  K I E+ VL   K DD+ K  KH   ++N+P    + +I   L+ L  TH  +
Sbjct: 97  ENYQDAHKIIVEI-VLQQHK-DDIPKDVKHLLNLMNNP----NKAISMELEYLICTHASL 150

Query: 549 I 551
           +
Sbjct: 151 V 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,122,632
Number of Sequences: 37544
Number of extensions: 281914
Number of successful extensions: 739
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)