Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F05
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)            30   2.3  
SB_54077| Best HMM Match : SRF-TF (HMM E-Value=4.4)                    29   3.1  
SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5)                     29   3.1  
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  
SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)                    28   9.4  

>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
 Frame = +3

Query: 411 VLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRI---IFQKRDSVEVE 581
           +LS+ + D +  L  HF K +   I EQ    QR LK  +  +KRI     QK D ++  
Sbjct: 155 ILSWNRADSL--LYDHFNKTLWAKIKEQGAPFQRELKIFRRINKRISNQCLQKGDYLDEA 212

Query: 582 YIFTTEKKSSLQRQRFNSLPVSEVPELLKNEFIAVENARQVHICTDCDVE 731
           Y     K  SL++    +L +     + +NE   V+  R+  +    D+E
Sbjct: 213 YTGVYVKGYSLKQDLPGAL-LKRCESMKRNEISYVKYFRRNMMQKFMDIE 261


>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 570

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 120 KSYCFFLFTESLTNLIFGSLLNYFKIIL----DILEFVRALNIRQFHPQTQHKRRGR 278
           K+Y  F +   +T+    ++LN   I+L    +   FVR LN+  F   T+H+R+ +
Sbjct: 304 KAYHPFRWVRYITHSFTSTILNSQSIVLFKTNNFASFVRQLNLYGFRKVTEHRRKNQ 360


>SB_26689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
 Frame = +1

Query: 175 VYLIISKLFWTFWSLYGHSTSDSSTLKHNTSGGAD*I----LALPRKSQNSQQISFILTA 342
           +YL++  +F   +S +  +  DSSTL H T   A  +    L     S NS  I  IL A
Sbjct: 786 IYLMVFLIFVILFSYFIITERDSSTLYHPTHPNASALEKQYLEKRPSSTNSITIVLILFA 845

Query: 343 TINF 354
           TI F
Sbjct: 846 TIEF 849


>SB_15161| Best HMM Match : MAP1B_neuraxin (HMM E-Value=2.7)
          Length = 210

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +3

Query: 456 HFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNS 635
           H T  I HP+  +      +   ++ET KR+      S    Y FT+EK S       N 
Sbjct: 16  HATTHIKHPLLSKKEYCPEFGDTIKETTKRL------SSSSFYYFTSEKNSWYPNPE-ND 68

Query: 636 LPVSEVPEL 662
           +P+S +P +
Sbjct: 69  IPLSTLPSI 77


>SB_54077| Best HMM Match : SRF-TF (HMM E-Value=4.4)
          Length = 344

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = +3

Query: 384 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPI--TEQSPSIQRYLKNLQET------- 536
           +TK+  +L  +      + K L KH   ++   +  TE++  + ++ ++L E        
Sbjct: 160 LTKHSHDLLEVQVIFTREKKLLTKHSRDLLEVQVIFTEENKLLTKHSRDLLEVQVIFTEE 219

Query: 537 HKRIIFQKRDSVEVEYIFTTEKKSSLQRQR 626
           +K +    RD +EV+ IFT EKK   +  R
Sbjct: 220 NKLLTKHSRDMLEVQVIFTREKKLLTKHSR 249


>SB_4809| Best HMM Match : SRF-TF (HMM E-Value=5.5)
          Length = 311

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = +3

Query: 384 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPI--TEQSPSIQRYLKNLQET------- 536
           +TK+  +L  +      + K L KH   ++   +  TE++  + ++ ++L E        
Sbjct: 163 LTKHSHDLLEVQVIFTREKKLLTKHSRDLLEVQVIFTEENKLLTKHSRDLLEVQVIFTEE 222

Query: 537 HKRIIFQKRDSVEVEYIFTTEKKSSLQRQR 626
           +K +    RD +EV+ IFT EKK   +  R
Sbjct: 223 NKLLTKHSRDMLEVQVIFTREKKLLTKHSR 252


>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 689  FDSYEFVFQQFGNFAHR*TVKPLPLQATFLLSRKNVFNFDA 567
            FD +       GNF+HR TVK LP     ++S++ +  F++
Sbjct: 1147 FDKFNNFVSGIGNFSHRYTVKHLPDTEENMMSQRVLGPFES 1187


>SB_47823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = +3

Query: 483 ITEQSPSIQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNSLPVSEVPEL 662
           +  ++P  Q  ++ + E  K + F+K +  E      TEKK   ++ RF+   + +V EL
Sbjct: 352 LVHENPGQQETVETVGEEIKEVDFEKEEIAENSSADVTEKKQ--RKFRFSKKKIQKVQEL 409


>SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 262

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 597 EKKSSLQ--RQRFNSLPVSEVPELLKNEFIAVENARQVHICTD 719
           EK+SS Q  +Q    + V + PELL  + + +E ++ +  C+D
Sbjct: 14  EKQSSRQFNQQDLQDMQVKDEPELLDFQSVVIEASKLLETCSD 56


>SB_40168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/53 (26%), Positives = 28/53 (52%)
 Frame = +3

Query: 504 IQRYLKNLQETHKRIIFQKRDSVEVEYIFTTEKKSSLQRQRFNSLPVSEVPEL 662
           I+R + N ++  K   + KRD  ++E    ++K  S   + + + PV++ P L
Sbjct: 280 IRRGIINARDPKKHCFWFKRDITDLEENINSQKAGSFIDKTWGTPPVADTPAL 332


>SB_3143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 197 YFGHFGVCTGTQHQTVPPSNTTQAEGQTESWHYQ 298
           YF  FG   G + + +P SN ++  GQT  W Y+
Sbjct: 63  YFSVFGEIEGLRAE-IPRSNKSRRTGQTLYWEYK 95


>SB_18246| Best HMM Match : SRF-TF (HMM E-Value=3.3)
          Length = 598

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
 Frame = +3

Query: 384 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPI--TEQSPSIQRYLKNLQE-----THK 542
           +TK+  +L  +      ++K L KH   ++   +  T++   + ++  +L E     T K
Sbjct: 408 LTKHSHDLLEVQVIFTKEMKLLTKHSRDMLEVQVIFTKKRKLLTKHSHDLLEVQVIFTKK 467

Query: 543 RIIFQK--RDSVEVEYIFTTEKKSSLQRQR 626
           R +  K  RD +EV+ IFT E+K   +  R
Sbjct: 468 RKLLTKHSRDMLEVQVIFTKERKLLTKHSR 497


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,303,149
Number of Sequences: 59808
Number of extensions: 346983
Number of successful extensions: 1123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)