Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F05
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +3

Query: 384 ITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQSPSIQRYLKNLQETHKRIIFQKR 563
           I K  S  T +S+  L+D+  L +HF ++             R   + QE  K I+F+K 
Sbjct: 136 IYKGKSSFTEISYLNLEDLIHLLQHFHELFAFDHVNLVMDHGRLFGDYQEVVKHILFRKC 195

Query: 564 DSVEV 578
             VE+
Sbjct: 196 HYVEI 200


>Z48717-10|CAA88612.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 191 QNYFG-HFGVCTGTQHQTVPPSNTTQAEGQTESWH 292
           QN FG HFG  +G   + +  +NT+ +  Q+ ++H
Sbjct: 135 QNNFGSHFGTGSGVNQRNITNTNTSSSNHQSSTFH 169


>Z48584-9|CAA88478.2|  423|Caenorhabditis elegans Hypothetical
           protein ZK1321.4 protein.
          Length = 423

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 191 QNYFG-HFGVCTGTQHQTVPPSNTTQAEGQTESWH 292
           QN FG HFG  +G   + +  +NT+ +  Q+ ++H
Sbjct: 135 QNNFGSHFGTGSGVNQRNITNTNTSSSNHQSSTFH 169


>Z68493-7|CAA92793.1|  339|Caenorhabditis elegans Hypothetical
           protein C33A12.10 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 475 LMILVKCFASFLTSSSFRNDSTVSSDMFFVMSS 377
           L   V  +A +LT  SFRN+ +V+S+  F  SS
Sbjct: 299 LQFCVVTWAFYLTHPSFRNNQSVNSNKIFSTSS 331


>U00055-3|AAA50723.3|  693|Caenorhabditis elegans Hypothetical
           protein R02F2.7 protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +3

Query: 315 TAD*FYFDCNY*FRVEMAENVEDITKNISELTVLSFRKLDDVKKLAKHFTKIINHPITEQ 494
           TA+     C Y   + +  +  D+  N SEL  +   K   +K++ KH   IIN     +
Sbjct: 282 TAEVCMSPCIYYAMISVLRSTFDL--NDSELIFIENLKTLKLKEITKHLPSIINSCSNTR 339

Query: 495 SPSIQRYLKNLQ 530
             +  + LKNL+
Sbjct: 340 QITASKKLKNLE 351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,841,836
Number of Sequences: 27780
Number of extensions: 288536
Number of successful extensions: 1016
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)