Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F04
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)                 37   0.019
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)                 33   0.32 
SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)               28   6.8  

>SB_40252| Best HMM Match : LRR_1 (HMM E-Value=8.2e-12)
          Length = 481

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 34/137 (24%), Positives = 56/137 (40%)
 Frame = +3

Query: 246 KDRFIHTAHGDSKMDSRDLCAMMVFDNDRHYQGQDA*TQEREQGDSLRACHVKITSTHST 425
           +DR I  ++    +D +++ A            +DA  ++R+Q   L        ST  T
Sbjct: 214 RDRIIVMSNSLVMLDGKEINATAKRFLMNWKANKDARKRQRKQHLQLEGTSSNTLSTIPT 273

Query: 426 LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQAEAVRQYYAAFPAL 605
           L  L  ++   +   G  V++    L  + D ED    M T   +   AV Q  A    L
Sbjct: 274 LPTLHGSIQTSQVGSGYFVNKGINPLIRLADPEDGQTLMLTRGNKTLAAVVQARAPNSTL 333

Query: 606 XKGQESPLQYYLPPPAW 656
            +G++ P+Q   PP  W
Sbjct: 334 LRGRDPPMQQSSPPAQW 350


>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
          Length = 820

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 100 TPYFCNNLNDVRISCYISIHTP 35
           TP +CNNL D+R   Y +IH P
Sbjct: 722 TPQWCNNLEDLRSQLYYTIHLP 743


>SB_11362| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-32)
          Length = 382

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +3

Query: 396 HVKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDS--VIGMPTCSIE 560
           H+K    HSTL   +  VC     L ++ D  C +  D++ H +S   +   TC+++
Sbjct: 253 HIKFR--HSTLRPYVCDVCDYRLVLISLFDYSCKTCSDLRRHRESHNAVFSYTCAVQ 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,452,870
Number of Sequences: 59808
Number of extensions: 531425
Number of successful extensions: 1283
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)