Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F03
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       174   5e-44
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       174   5e-44
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       126   1e-29

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  174 bits (424), Expect = 5e-44
 Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 2/206 (0%)
 Frame = +1

Query: 19  LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 198
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 199 IIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIP 372
           IIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVP 134

Query: 373 SNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNF 552
           + ++   +FRLL+VD               TA DVIHS  +P+L VK+DA PGRLNQT F
Sbjct: 135 TTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGF 194

Query: 553 FINRPGIFFGQCSEICGANHSFIPIV 630
           FI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 195 FIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  174 bits (424), Expect = 5e-44
 Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 2/206 (0%)
 Frame = +1

Query: 19  LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 198
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 199 IIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIP 372
           IIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVP 134

Query: 373 SNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNF 552
           + ++   +FRLL+VD               TA DVIHS  +P+L VK+DA PGRLNQT F
Sbjct: 135 TTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGF 194

Query: 553 FINRPGIFFGQCSEICGANHSFIPIV 630
           FI RPG+F+GQCSEICGANHSF+PIV
Sbjct: 195 FIKRPGVFYGQCSEICGANHSFMPIV 220


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  126 bits (305), Expect = 1e-29
 Identities = 69/188 (36%), Positives = 98/188 (52%), Gaps = 2/188 (1%)
 Frame = +1

Query: 19  LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 198
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 199 IIPAFTLIFIAXXXXXXXXXXXXXXXXXITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIP 372
           IIPA  LIFIA                 +T+K++GHQ Y  YEYSD+ +  +EFDSY++P
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVP 134

Query: 373 SNEIKNNEFRLLDVDXXXXXXXXXXXXXXXTATDVIHS*TIPSLGVKVDANPGRLNQTNF 552
           + ++   +FRLL+VD               TA DVIHS  +P+L VK+DA PGRLNQT F
Sbjct: 135 TTDLNQGDFRLLEVDNRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGF 194

Query: 553 FINRPGIF 576
           FI +   F
Sbjct: 195 FIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,487
Number of Sequences: 59808
Number of extensions: 194572
Number of successful extensions: 319
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)