Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F02
         (784 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q038U4 Cluster: DNA primase; n=1; Lactobacillus casei A...    34   4.6  
UniRef50_Q3LWC6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_Q8LX75 Cluster: Cytochrome oxidase II; n=1; Chaoborus a...    33   8.1  

>UniRef50_Q038U4 Cluster: DNA primase; n=1; Lactobacillus casei ATCC
           334|Rep: DNA primase - Lactobacillus casei (strain ATCC
           334)
          Length = 595

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = -2

Query: 594 PVMTFTKSLK--LQYSWHNQFIIRRIKLCSFIRTLPHFKILYNFIFHFI 454
           P+  +T + +  L Y WH+  +++R+K  +F   +PHF+ L+     F+
Sbjct: 454 PIDRYTAAQRQLLYYVWHDDLVMQRLKNTAFTFPVPHFQTLFTGWLDFL 502


>UniRef50_Q3LWC6 Cluster: Putative uncharacterized protein; n=1;
           Bigelowiella natans|Rep: Putative uncharacterized
           protein - Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 160

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = -2

Query: 660 LFHVKNLRFSLTTTNSLYFYKFPVMTFTKSLKLQYSWHNQFIIRRIKL-CSFIRTLPHFK 484
           L+ VK L F LTT   + F       F   LK++++ ++QF+I   KL  SF   +   K
Sbjct: 75  LYIVKRLYF-LTTIQLIIFRVKYYYIFKNELKIKHNQYHQFLINHRKLYASFFNVILIVK 133

Query: 483 ILYNFIFHF 457
               FIF F
Sbjct: 134 TFLMFIFLF 142


>UniRef50_Q8LX75 Cluster: Cytochrome oxidase II; n=1; Chaoborus
           americanus|Rep: Cytochrome oxidase II - Chaoborus
           americanus
          Length = 96

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 491 TLKFFIILFFISYNHK*VFKKITSSLYLIMLIT 393
           T+KFF   +FI++N+   F  +TS LY  ++IT
Sbjct: 59  TIKFFPWSYFINFNNNYYFSLVTSLLYYFLMIT 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,475,000
Number of Sequences: 1657284
Number of extensions: 10363274
Number of successful extensions: 21933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21923
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)