Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F02
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    28   1.3  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    28   1.7  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   3.0  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.3  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 79  LASTVSSPCGXHVSFCPVSAINAVLKNXTXXNTKXTTHYSSN 204
           ++ T+   CG  V  CP  AIN ++   T   ++ T  YS+N
Sbjct: 50  ISETLCIGCGICVKKCPFGAIN-IINLPTNLESEVTHRYSAN 90


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -2

Query: 633 SLTTTNSLYFYKFPVMTFTKSLKLQYSWHNQFIIRRIKLCSFIRTLPHFKILYNFIFHF 457
           +LTTT+ +  +KFP+ +  K    +  +   F +     C  + +L   K  +NF+F F
Sbjct: 143 NLTTTSEIPTFKFPIFSKRKYNDTENLYEQPFHL-EFDTCQELLSLFFLKQYHNFMFVF 200


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 605 KYNELVVVSENLKFLTWNKKSIAFIYGSRIXNNNHYTTGSFFSSLY-AFNII*EN 766
           ++  L+   E  K   W+K+   F YG  +  N   T  +FF +LY +F  + EN
Sbjct: 443 EFENLIKQQEEAKKSLWSKRFSRFYYGHYVFVN---TCHNFFLTLYQSFTEVDEN 494


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = -2

Query: 630  LTTTNSLYFYKFPVMTFTKSLKLQYSWHNQFIIRRIKLCSFIRTLPHFKILYNFIF 463
            + + NS   YK         LKL   W N ++   +  C   R   + K+L  ++F
Sbjct: 2327 IASANSNIVYKLSYDVIRHFLKLVVLWKNIYVWTNVPDCDISRFYCYTKMLGEWMF 2382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,275
Number of Sequences: 5004
Number of extensions: 49235
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)