Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_F02
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical ...    28   8.7  

>AF039045-8|AAB94199.1|  300|Caenorhabditis elegans Hypothetical
           protein F15E11.2 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 608 YNELVVVSENLKFLTWNKKSIAFIYGSRIXNNNHYTTGSFFSSL-YAFNI 754
           +  LV+  +N +F++  KK +  I+G  + NN + T   F  SL Y +++
Sbjct: 247 FGSLVIGPDNKQFVSHLKK-VEVIFGGLVVNNTNLTNIDFLESLKYIYHL 295


>AF039045-7|AAB94207.1|  333|Caenorhabditis elegans Hypothetical
           protein F15E11.11 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 608 YNELVVVSENLKFLTWNKKSIAFIYGSRIXNNNHYTTGSFFSSL-YAFNI 754
           +  LV+  +N +F++  KK +  I+G  + NN + T   F  SL Y +++
Sbjct: 280 FGSLVIGPDNEQFVSHLKK-VEVIFGGLVVNNTNLTNIDFLESLKYIYHL 328


>AC006723-5|AAK68424.1|  575|Caenorhabditis elegans Hypothetical
           protein Y19D10B.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 608 YNELVVVSENLKFLTWNKKSIAFIYGSRIXNNNHYTTGSFFSSL-YAFNI 754
           +  LV+  EN +F++   K +  I+G  + NN + T   F  SL Y +++
Sbjct: 425 FGSLVIGPENEQFVS-QLKYVEMIFGRLVVNNTNLTNIDFLQSLKYIYSL 473


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,188
Number of Sequences: 27780
Number of extensions: 272294
Number of successful extensions: 613
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)