Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E23
(692 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 165 4e-42
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 70 4e-13
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 61 2e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 60 3e-10
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 53 3e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 53 5e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 1e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 50 2e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 50 4e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 49 6e-07
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 48 2e-06
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 46 4e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 5e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 5e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 46 7e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 46 7e-06
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 3e-05
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 44 3e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 6e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 1e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 41 1e-04
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 2e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 3e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 6e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 8e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 8e-04
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.004
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.004
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.007
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.013
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.022
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.022
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.052
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.052
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 33 0.052
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.068
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.090
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.21
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 30 0.28
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.36
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.84
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 29 0.84
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.1
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.9
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.6
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 27 3.4
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 4.5
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.9
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 25 7.9
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 7.9
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 165 bits (402), Expect = 4e-42
Identities = 83/205 (40%), Positives = 126/205 (61%), Gaps = 6/205 (2%)
Frame = +3
Query: 93 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 269
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 270 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 449
+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Query: 450 H-----GKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQV 614
K+FVGG+ + +++E RNFF++FG +L + DK + +GF F+T+E+E
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 615 VNDLLKTPKRTIGGKEVDVXRATPK 689
V + P TI GK V+V RATPK
Sbjct: 301 VEATMSQPYITIHGKPVEVKRATPK 325
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 69.7 bits (163), Expect = 4e-13
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 25/190 (13%)
Frame = +3
Query: 195 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 368
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 369 ESIDKVMAA-GEHTINNKKV-----DPKK------AKARHGK-----------IFVGGLS 479
E+ +AA G I+ + V +P+ A+ R G +FVG LS
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 480 SEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGK 659
++D++ F G I + +P D + KGF ++TF ++ I G+
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGR 434
Query: 660 EVDVXRATPK 689
+ +TP+
Sbjct: 435 PCRLDFSTPR 444
Score = 43.2 bits (97), Expect = 4e-05
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKT 635
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 636 PKRTIGGKEVDVXRATPKP 692
+ I G+ V++ + P+P
Sbjct: 325 GTKEIDGRMVNLDLSNPRP 343
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 60.9 bits (141), Expect = 2e-10
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 398
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 399 EHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPF 554
+T+ + DP K G +F+ L I + + + FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 555 DKTKNQRKGFCFITFESEQVVN 620
D+ N KG+ F+ F+S + N
Sbjct: 202 DELGN-AKGYGFVHFDSVESAN 222
Score = 46.4 bits (105), Expect = 4e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 389
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 60.1 bits (139), Expect = 3e-10
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +3
Query: 117 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 296
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 297 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 407
+ + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 32.7 bits (71), Expect = 0.052
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF 599
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 53.2 bits (122), Expect = 3e-08
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +3
Query: 201 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 380
+D R +FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 381 KVMAAGE 401
K + E
Sbjct: 326 KALLLNE 332
Score = 40.7 bits (91), Expect = 2e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 635
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 636 PKRTIGGKEVDVXRA-TPKP 692
K+ G+ + + RA + KP
Sbjct: 332 EKKMPEGRTLRIMRAKSTKP 351
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 52.8 bits (121), Expect = 5e-08
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Frame = +3
Query: 183 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 356
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 357 FKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHGK 458
F P++ I K + HTI +K++ + GK
Sbjct: 140 FINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
Score = 42.3 bits (95), Expect = 6e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 399 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFD 557
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 558 KTKNQRKGFCFITF 599
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 51.6 bits (118), Expect = 1e-07
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 207 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 386
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 387 MAAGEHTINNK--KVDPKK 437
+ ++ + KV PK+
Sbjct: 113 LLLNGSMLHERPLKVTPKR 131
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLL 629
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.4 bits (115), Expect = 2e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +3
Query: 399 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRK 578
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 579 GFCFITFESEQVVNDLLKT 635
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +3
Query: 201 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 359
RDD L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 432 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF 599
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 49.2 bits (112), Expect = 6e-07
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Frame = +3
Query: 369 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 548
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 549 PFDKTKNQRK----GFCFITFESEQVVNDLLKTPK-RTIGGKEVDVXRATP 686
PF + + + G F+TF +++ V+ ++T +T+ +E+ V +A P
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARP 126
Score = 40.3 bits (90), Expect = 3e-04
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +3
Query: 165 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGR 332
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 333 SR----GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 437
+R G AF+ F E +DK + T+N K +D ++
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 47.6 bits (108), Expect = 2e-06
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Frame = +3
Query: 207 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 386
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 387 MA-AGEHTINNKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIR 506
+A +G+ + + K KAR ++ V + ++D++++
Sbjct: 298 IALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVK 357
Query: 507 NFFSEFGTILXVEMPFDKTKNQRKGFCFITFES 605
F FG I V + D +N+ KGF +I + +
Sbjct: 358 AIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +3
Query: 216 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 374
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
Score = 34.3 bits (75), Expect = 0.017
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 635
+FV L++ ++ E+ +FF + G + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 636 PKRTIG 653
KR +G
Sbjct: 302 GKRLLG 307
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +3
Query: 144 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIESINVKT 314
+ E+ G S D NS RD++ +FV L +E T++EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 315 DPNTGRSRGFAFIVFK 362
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 398
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 399 EHTINNKKV 425
E + NKK+
Sbjct: 65 E--LKNKKL 71
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 638
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 639 K-RTIGGKEVDVXRATPK 689
K + + G+ + + ATP+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 31.9 bits (69), Expect = 0.090
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 372 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 545
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 546 MPFDKTKNQRKGFCFITFESEQVVNDLLK 632
+ D ++ G FI F E+ + L+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.4 bits (105), Expect = 4e-06
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Frame = +3
Query: 456 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 632
++F+ L+ ++D++++ F FG + V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 633 TPKRTIGGKEVDVXRA 680
+ G+ + V A
Sbjct: 384 LDAKPFQGRLLHVLPA 399
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.0 bits (104), Expect = 5e-06
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +3
Query: 204 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 362
D + +F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 46.0 bits (104), Expect = 5e-06
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Frame = +3
Query: 378 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEM 548
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 549 PFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVXRA 680
+ +GF F++F + E+ + + + G+ ++V +A
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 45.6 bits (103), Expect = 7e-06
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +3
Query: 126 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 305
+++++ N E+ D ++ SA + LFV G++ + EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 306 VKTDPNTGRSRGFAFIVFKAPE 371
+ +P T SRGF F+ F E
Sbjct: 132 IMREPVTKASRGFGFLSFSTVE 153
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 45.6 bits (103), Expect = 7e-06
Identities = 22/79 (27%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +3
Query: 450 HGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 626
H ++FVG L ++++D+ + FSE+ +++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 627 LKTPKRTIGGKEVDVXRAT 683
+ + IG + V + RAT
Sbjct: 88 REKNGKYIGSRPVKLSRAT 106
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 216 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 362
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 45.6 bits (103), Expect = 7e-06
Identities = 28/100 (28%), Positives = 47/100 (47%)
Frame = +3
Query: 150 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 329
E G G ++ P + VG LS++ T+ +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 330 RSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 449
RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +3
Query: 465 VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 644
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 645 TIGGKEVDVXRATPK 689
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +3
Query: 174 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 353
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 354 VFKAPESI 377
F SI
Sbjct: 141 SFDKRSSI 148
Score = 33.5 bits (73), Expect = 0.030
Identities = 16/79 (20%), Positives = 38/79 (48%)
Frame = +3
Query: 456 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKT 635
++FV +S ++ +++R F FG + +++ + G C I+F+ ++ +
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVAAHS 154
Query: 636 PKRTIGGKEVDVXRATPKP 692
K I ++ + R + KP
Sbjct: 155 AK--IAVQQANGLRFSGKP 171
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQ 611
I++G L ++++D+I FSEFG + + + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +3
Query: 207 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 374
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.3 bits (95), Expect = 6e-05
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 398
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 399 EHTINNKKVDPKKAK 443
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
Score = 33.9 bits (74), Expect = 0.022
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 635
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 636 PKRTIGGKEVDV 671
+G +++ V
Sbjct: 69 NNSELGPRKIRV 80
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 386
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.1 bits (92), Expect = 1e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 372 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILXVE 545
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 546 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 647
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Score = 34.3 bits (75), Expect = 0.017
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 395
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 396 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 515
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 392
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 393 AGEHTINNKKVDPKKAKARHGK 458
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/143 (19%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Frame = +3
Query: 201 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 380
R+ D +++G L + TD L + G + +I++ D GF F F + ++
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 381 KV-MAAGEHTINNKKVDPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTIL 536
+ + K + +A G +FVG L + + + + FS G ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 537 XVEMPFDKTKNQRKGFCFITFES 605
+ KG+ F++++S
Sbjct: 127 KAPQVARDENGRSKGYGFVSYDS 149
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/81 (20%), Positives = 43/81 (53%)
Frame = +3
Query: 207 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 386
+ R+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 387 MAAGEHTINNKKVDPKKAKAR 449
++A + N+ ++ +K R
Sbjct: 813 LSAAGKQLGNRVLNVVLSKPR 833
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 429 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMP 551
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 34.7 bits (76), Expect = 0.013
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 359
+FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.84
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 329
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 6e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 383
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 31.9 bits (69), Expect = 0.090
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVV 617
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 8e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 362
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 38.7 bits (86), Expect = 8e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDK 560
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 635
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 636 PKRTIGGKEVDV 671
+ G+E+ V
Sbjct: 161 NNAELDGEELFV 172
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.004
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 219 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 368
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 30.7 bits (66), Expect = 0.21
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITF 599
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.007
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Frame = +3
Query: 408 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXV-------------E 545
+NN K+ P + + I+VG + S +SD+EI FS++G + +
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 546 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVXRATPKP 692
PF KN + + F+ F + + + ++LK K T+G +++ + P
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
Score = 35.5 bits (78), Expect = 0.007
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Frame = +3
Query: 174 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIESI----------NVKTD 317
+++ PG+ D+ ++VG + +D+E+ HF YG++ESI K
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAK 61
Query: 318 PNTGRSRG--FAFIVFKAPESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 461
P G + F+ F ESI++V+ A T+ +K+ K K+
Sbjct: 62 PFKPPKNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
Score = 35.1 bits (77), Expect = 0.010
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +3
Query: 165 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIESINVKTDPNTGRS 335
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 336 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 437
+G+ F+ F+ E+ + T+N V K+
Sbjct: 425 KGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 34.7 bits (76), Expect = 0.013
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 456 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTK-NQRKGFCFITFESEQ 611
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
Score = 33.5 bits (73), Expect = 0.030
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 210 DRKLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 371
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 33.9 bits (74), Expect = 0.022
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 456 KIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFES 605
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 31.5 bits (68), Expect = 0.12
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +3
Query: 204 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 383
D K+++ L + ++ + +G++ S + + G S+GF F FK P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 384 VMAA--GEHTINNK 419
++ G+ T NK
Sbjct: 367 AISGLDGKDTYGNK 380
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.9 bits (74), Expect = 0.022
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 411 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCF 590
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 591 ITFESEQ 611
FE E+
Sbjct: 342 ACFEEEK 348
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.052
Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 432 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESE 608
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I + +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATL 61
Query: 609 QVVNDLLKTPKRTIGGKEVDVXRATPKP 692
+ + ++ ++++V A +P
Sbjct: 62 EQAQKAVDEKNLSLLDEKLEVDFAFLEP 89
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 32.7 bits (71), Expect = 0.052
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 465 VGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 644
V L ++ + ++ + F F I + M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPIRVI-MNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 645 T-IGGKEVDVXRATP 686
T + G E+ + + +P
Sbjct: 147 TNLKGSEIQISKKSP 161
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 32.7 bits (71), Expect = 0.052
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 207 DDRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 368
++ K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.068
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 213 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 323
R +F+G L +KE+ + FG +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEM 548
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.090
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 255 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 431
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 432 KKAKARHGK 458
A+ R +
Sbjct: 495 NYAEKREDR 503
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Frame = +3
Query: 387 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTK 566
M A E K KK + I+VG L S ++ F FG M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 567 NQRKG------FCFITFESE 608
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 489 SDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 668
+++ IR+FFS+FG + VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 669 VXRATP 686
+ P
Sbjct: 309 IFWYNP 314
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 30.3 bits (65), Expect = 0.28
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +3
Query: 189 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 368
E P LF+ G+ E D ++R HF YG ++S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 369 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 503
S + +AA N ++ + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 29.9 bits (64), Expect = 0.36
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 477 SSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFES 605
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.84
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 213 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 323
R +F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 180 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 323
N A A R +++G T + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTI 533
+F+G L + I++DEIR FG I
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPI 232
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 0.84
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +3
Query: 264 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 443
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 444 ARHGKIFVGGLS 479
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +3
Query: 423 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI 533
+ P K +F+GG++ + + +R+ F FG++
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSV 432
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 336 RGFAFIVFKAPESIDKVMAAGEHTINNKK 422
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 226 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 113
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 459 IFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 638
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 210 DRKLFVGGLSWETTDKELRDHFGAYGEI 293
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 443 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 282
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 429 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILXVEMPFDKTKN 569
P++ + +GK L+S ++E+RN FSEF L E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 479 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 300
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 299 TL 294
TL
Sbjct: 1251 TL 1252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,128
Number of Sequences: 5004
Number of extensions: 58865
Number of successful extensions: 272
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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