Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E21
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 191 8e-50
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 190 1e-49
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 27 1.7
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.7
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 3.0
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 5.2
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 5.2
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 9.1
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 9.1
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 191 bits (465), Expect = 8e-50
Identities = 87/152 (57%), Positives = 111/152 (73%)
Frame = +1
Query: 73 SKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCA 252
+K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR A
Sbjct: 12 TKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTA 71
Query: 253 QAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 432
Q K+FG TQ RWP KS +F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYR
Sbjct: 72 QGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYR 131
Query: 433 AHGRINPYMSSPCHIEVCLSEREDAVARVAPT 528
AHGR+ Y+SSP HIE+ ++E E+AV + T
Sbjct: 132 AHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 190 bits (463), Expect = 1e-49
Identities = 87/152 (57%), Positives = 110/152 (72%)
Frame = +1
Query: 73 SKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCA 252
+K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR A
Sbjct: 12 TKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTA 71
Query: 253 QAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 432
Q K+FG TQ RWP KS F LL+NAE+NA+ K LD+D+L+I H+QVN AP RRRTYR
Sbjct: 72 QGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYR 131
Query: 433 AHGRINPYMSSPCHIEVCLSEREDAVARVAPT 528
AHGR+ Y+SSP HIE+ ++E E+AV + T
Sbjct: 132 AHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 27.5 bits (58), Expect = 1.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 363 RGQASHRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 488
+ Q+ S K RA +T + ++S HQ +H +S PH S S
Sbjct: 331 QAQSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +1
Query: 100 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 213
NLRV K T ++ +++ P + RYLK ++E K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 277 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 194
++C TA+L+H D RR G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 107 VFTLRTHMRPQWQSGRCRSVVL 172
V+ R + W+ GRCR VVL
Sbjct: 248 VYAERCRVECNWRHGRCRQVVL 269
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 70 LSKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 240
LS + R + L + K E AM + + L+R V+Y + + EC + +NGGV
Sbjct: 475 LSSDTQTRLNRLFLSIKYFSEKAMRVFILLLQRQVKYSELLNYYIECC--KNYNGGV 529
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 453 LH-VVSLPHRSMSQRTRRCCRQGSPY**CPSEEKAFQEKACASKGEDDE 596
LH ++ LP RS S T +C + P K +E +SKG+D+E
Sbjct: 182 LHSIIKLPDRS-SSFTLQCINESVR----PQSTKVKEEATTSSKGKDEE 225
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +1
Query: 97 SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 204
+N ++ K+ ETA A+RKM + +R L+ + ++K
Sbjct: 73 TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,541
Number of Sequences: 5004
Number of extensions: 50016
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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