Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E21
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   239   1e-63
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   131   5e-31
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    30   1.6  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  239 bits (585), Expect = 1e-63
 Identities = 113/155 (72%), Positives = 131/155 (84%)
 Frame = +1

Query: 73  SKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCA 252
           +KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF+GG+GR A
Sbjct: 14  TKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAA 73

Query: 253 QAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 432
           Q KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYR
Sbjct: 74  QTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYR 133

Query: 433 AHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 537
           AHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 134 AHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  131 bits (316), Expect = 5e-31
 Identities = 81/155 (52%), Positives = 96/155 (61%)
 Frame = +1

Query: 73  SKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCA 252
           +KSCKARGS+LRVHFKNT+E A     M LR               +P RR    +    
Sbjct: 14  TKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRAQAFLNHVK 54

Query: 253 QAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYR 432
           + K+    +           L LL+NAESNA+ K LDVD LVI+HI V RA  LRRRTYR
Sbjct: 55  EHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYR 105

Query: 433 AHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 537
           AHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 106 AHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 138


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -2

Query: 610 LMSIPSSSSPFDAQAFSWKAFSSLGHHQ*GLPWRQHLRVR*DILRCGRETTCRG 449
           L+S   +   F + A+  +A ++L  H+  L    HL  + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +1

Query: 286 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 447
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 448 NPYMSSPCHIEVCLSER 498
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 475 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACPRPKFCC 347
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,317,904
Number of Sequences: 27780
Number of extensions: 299936
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)