Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E18
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 141 5e-35
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 105 5e-24
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 96 3e-21
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 89 3e-19
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 89 4e-19
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 83 2e-17
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 66 4e-12
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 60 1e-10
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 48 6e-07
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 25 5.0
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 25 8.8
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 8.8
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 141 bits (342), Expect = 5e-35
Identities = 73/130 (56%), Positives = 90/130 (69%)
Frame = +3
Query: 87 VSXNPIRLLKNXXXXXXXXXXRMSSFIGAIAIGXLVKSTLGPKGMDKILVSCGRNSGQVE 266
+S NP ++ R+SSF+GAIA+G LVKSTLGPKGMDKIL S +SG +
Sbjct: 1 MSLNPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQS--NSSGDIV 58
Query: 267 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 446
VTNDGATILKSI +DN AAK+LV++SKVQD+EVGDGTTSV V ++ K+H
Sbjct: 59 VTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIH 118
Query: 447 PQTIIAGWRI 476
PQ II G+RI
Sbjct: 119 PQVIIDGYRI 128
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 105 bits (251), Expect = 5e-24
Identities = 51/109 (46%), Positives = 74/109 (67%)
Frame = +3
Query: 150 RMSSFIGAIAIGXLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 329
R + + AI +VKS+LGP G+DK+LV + G V VTNDGATIL + V++PA K+
Sbjct: 23 RNQNVLATTAIANVVKSSLGPVGLDKMLVD---DIGDVTVTNDGATILSLLDVEHPAGKV 79
Query: 330 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRI 476
LV++++ QD+EVGDGTTSV + +L++ K+HP TII G+R+
Sbjct: 80 LVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRL 128
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 95.9 bits (228), Expect = 3e-21
Identities = 49/105 (46%), Positives = 73/105 (69%)
Frame = +3
Query: 150 RMSSFIGAIAIGXLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 329
R+S+ + A ++ ++++LGPKGMDK ++ G+ G+V +TNDGATILK + V +PAAK+
Sbjct: 21 RLSNIMAARSVADAIRTSLGPKGMDK-MIQTGK--GEVILTNDGATILKHLSVLHPAAKM 77
Query: 330 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIA 464
LVD+S QD E GDGTTSV + KL+++ +HP T+IA
Sbjct: 78 LVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHP-TVIA 121
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 89.4 bits (212), Expect = 3e-19
Identities = 44/105 (41%), Positives = 66/105 (62%)
Frame = +3
Query: 156 SSFIGAIAIGXLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILV 335
S + + +V+++LGP+G+DKIL+S G++ VTNDGATIL + V++ AK+LV
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILIS---PDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 336 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGW 470
+SK QD+E+GDGTT V V LI++ +HP I G+
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGY 139
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 89.0 bits (211), Expect = 4e-19
Identities = 46/125 (36%), Positives = 71/125 (56%)
Frame = +3
Query: 99 PIRLLKNXXXXXXXXXXRMSSFIGAIAIGXLVKSTLGPKGMDKILVSCGRNSGQVEVTND 278
P+ +LK +S+ +A+ +++TLGP G DK++V + G+V ++ND
Sbjct: 9 PVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVD---DRGEVVISND 65
Query: 279 GATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 458
GATI+K + + +PAAK LVD+++ QD EVGDGTTSV V +E + I
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
Query: 459 IAGWR 473
I G+R
Sbjct: 126 IRGYR 130
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 83.0 bits (196), Expect = 2e-17
Identities = 42/126 (33%), Positives = 73/126 (57%)
Frame = +3
Query: 96 NPIRLLKNXXXXXXXXXXRMSSFIGAIAIGXLVKSTLGPKGMDKILVSCGRNSGQVEVTN 275
+P+ ++ +MS+ A A+ ++++ LGP+ M K+L+ G V +TN
Sbjct: 3 SPVFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLD---PVGSVLLTN 59
Query: 276 DGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQT 455
DG IL+ I V +PAAK ++++++ QDEEVGDGTTSV + L+++K+HP
Sbjct: 60 DGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVV 119
Query: 456 IIAGWR 473
+I ++
Sbjct: 120 MIRSFK 125
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 65.7 bits (153), Expect = 4e-12
Identities = 34/102 (33%), Positives = 52/102 (50%)
Frame = +3
Query: 171 AIAIGXLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 350
AI + ++KS LGP G K+LV +G +++T DG +L + + NP A + +
Sbjct: 25 AIGLQDVLKSNLGPTGTTKMLVD---GAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATA 81
Query: 351 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRI 476
QD+ GDGTTSV + I + LHP I G+ +
Sbjct: 82 QDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNL 123
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 60.5 bits (140), Expect = 1e-10
Identities = 32/99 (32%), Positives = 55/99 (55%)
Frame = +3
Query: 180 IGXLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 359
+ + +++LGP G +KI+V+ + Q +TND ATI++ + V +PAAK++VD ++ Q+
Sbjct: 38 LSEITRTSLGPNGKNKIVVN---HLQQTFLTNDAATIIRELEVIHPAAKLVVDATQQQEN 94
Query: 360 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRI 476
E+GD V V +I L P I G+ +
Sbjct: 95 ELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEM 133
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 48.4 bits (110), Expect = 6e-07
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Frame = +3
Query: 150 RMSSFIGAIAIGXLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 317
R S G + V TLGPKG + ++ + G ++T DG T+ +S+ + +N
Sbjct: 44 RASLLTGVDTLARAVSVTLGPKGRNVLI---DQPFGSPKITKDGVTVARSVSLKDKFENL 100
Query: 318 AAKILVDMSKVQDEEVGDGTTSVTV 392
A+++ D++ +E GDGTT+ TV
Sbjct: 101 GARLVQDVASKTNEVAGDGTTTATV 125
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 5.0
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 304 PIDFNIVAPSFVTST*PEFLPQETKILSIP 215
P+D ++ +P TST PE LP+E S+P
Sbjct: 408 PLDGDVESPH-PTSTMPEALPREPLSFSLP 436
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 251 VPPAGN*DLIHSFGT*STLYQXSYGNGTD 165
V P + L+H +G T YQ YG D
Sbjct: 308 VVPGTSVPLVHDYGASGTGYQAGYGMALD 336
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 24.6 bits (51), Expect = 8.8
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 198 STLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGD 371
S LG G+ RN G + DG T LKS+GV + K+ VQ ++ D
Sbjct: 330 SQLGIPGVKPEAYRDSRNFGGRDA--DGVTGLKSLGVRDLTYKLSFLACMVQPDDAND 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,071
Number of Sequences: 5004
Number of extensions: 30189
Number of successful extensions: 80
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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