Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E17
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     55   3e-08
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    53   9e-08
06_01_0909 - 7011253-7012385,7014966-7015221                           27   9.2  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 31/75 (41%), Positives = 41/75 (54%)
 Frame = +2

Query: 65  MXHAAGAFVXLXCPRXCSASNRLIHAKDHASVQLVIADVXPATGRAADTSKMYVVCGAIR 244
           M +  G  V L  PR CSA+NR+I AKDHASVQ+ I  V    G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHV-DENGLYDGRFTTFALSGFIR 59

Query: 245 RMGESDDCIVRLTKK 289
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 53.2 bits (122), Expect = 9e-08
 Identities = 30/75 (40%), Positives = 40/75 (53%)
 Frame = +2

Query: 65  MXHAAGAFVXLXCPRXCSASNRLIHAKDHASVQLVIADVXPATGRAADTSKMYVVCGAIR 244
           M +  G  V L  PR CS +NR+I AKDHASVQ+ I  V    G        + + G IR
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHV-DENGLYDGRFTTFALSGFIR 59

Query: 245 RMGESDDCIVRLTKK 289
             G++D  + RL +K
Sbjct: 60  AQGDADSALDRLWQK 74


>06_01_0909 - 7011253-7012385,7014966-7015221
          Length = 462

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 1   RPADSFFSHLSIPCPVWTS 57
           RP  SF  HL  P PVW S
Sbjct: 236 RPTASFDVHLDAPDPVWAS 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,594,943
Number of Sequences: 37544
Number of extensions: 186518
Number of successful extensions: 380
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)