Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E16
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 29 0.73
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 29 0.97
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.3
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 28 1.3
SPCC1393.11 |||mitochondrial ribosomal protein subunit L20|Schiz... 28 1.7
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 27 2.2
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.9
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 3.9
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 6.8
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.8
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 26 6.8
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 9.0
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.0
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.1 bits (62), Expect = 0.73
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +3
Query: 396 ILRKCNEDGSDPYL--GLLNYRNTPKPYMPSPAQLLYSRNLNSLIPVPRSTLKPKLFYCD 569
I++ N SD L GLL P MP + Y LN + +S + FY
Sbjct: 191 IMKMQNRSASDTQLIRGLLLDHGARHPDMPKQVKNAYILILNVSLEYEKSEINSGFFYST 250
Query: 570 SKYYNHL-NSVKKNYDKCAKELPQLK 644
S+ L S +K D +++ +LK
Sbjct: 251 SEQRERLVESERKFVDNKLRKIVELK 276
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 28.7 bits (61), Expect = 0.97
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +3
Query: 459 TPKPYMPSPAQLL-YSRNLNSLIPVPRSTLKPKLFYC-DSKYY-NHL 590
TP+ +P+ + YS+ +S +P L +LF+C DSKYY HL
Sbjct: 358 TPQNPLPTDKNIYTYSQKTSSFVPFA-GNLITELFFCSDSKYYVRHL 403
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +3
Query: 387 FKNILRKCNEDGSDPYLGLLNYRNTPKPYMPSPAQLLYSRNLNSLIP-VPRSTLKPKLFY 563
FK+++RK +ED + + NY + Y ++ +Y++ L +L P P + L+Y
Sbjct: 55 FKSLIRKYSEDSTLAWRDYENYNDDDLLYQRELSE-IYNKCLKALHPFYPVFEVNSNLYY 113
Query: 564 CDSKYYNHLNSVKKNYDK 617
+ N+ N + K
Sbjct: 114 QLLMFTNYSNPKDNGFSK 131
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 197 LCNSELQIYFWKAWHTIICSYRLWYTVYV 283
+CN+ + FW+AWH S+ W Y+
Sbjct: 418 MCNNYSAVGFWRAWHR---SFNRWLIRYI 443
>SPCC1393.11 |||mitochondrial ribosomal protein subunit
L20|Schizosaccharomyces pombe|chr 3|||Manual
Length = 197
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 459 TPKPYMPSPAQLLYSRNLNSLIPVPRSTLKPKL 557
T KP P + +RNLN L P R +PK+
Sbjct: 4 TIKPSFLKPVGFIQTRNLNRLYPKQRIPKRPKI 36
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 510 LNSLIPVPRSTLKPKLFYCDSKYYNHLNSVKKNY-----DKCAKELPQLKLHQEVYFKKT 674
L++ IP ST+ K D K N+ NSVK+ D +K L + H+E Y+++T
Sbjct: 1535 LDANIPNSPSTITAKPLN-DEKAINNENSVKQKTVITRKDVVSKVLALFRPHRETYYRET 1593
Query: 675 LXSNWQK 695
QK
Sbjct: 1594 QNKILQK 1600
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 462 PKPYMPSPAQLLYSRNLNSLIPV 530
P PY PS Q L SR L+S + V
Sbjct: 311 PSPYQPSSLQPLESRKLHSKVDV 333
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Frame = +3
Query: 324 HIKSSPKHSQSNGLSESGV------KIFKNILRKCNEDGSDPYLGLLNYRNTPKPYMPSP 485
H SSPKHS +N S+SG + +N+L + + + P + N P P
Sbjct: 348 HGISSPKHSTNNLSSKSGKFHSDFRVVSENVLLQARSETNSPIIENKEANNFLAPTSNVP 407
Query: 486 AQLLYSRNLNSLIPVPRST 542
A +R S P P S+
Sbjct: 408 AYSTPARPTESPPPPPISS 426
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/54 (24%), Positives = 22/54 (40%)
Frame = +3
Query: 471 YMPSPAQLLYSRNLNSLIPVPRSTLKPKLFYCDSKYYNHLNSVKKNYDKCAKEL 632
Y P + Y L S +P + + ++ + N + V + Y KC K L
Sbjct: 361 YPPQIVEGNYDTRLPSALPDEIHNVDSSVIISEATFVNIITKVSRAYSKCLKVL 414
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 441 LLNYRNTPKPYMPSPAQLLYSRNLNSLIPVPRSTLKPKLFYCDSKY 578
LL Y + PY+ P+ L + L L + R+ +F C KY
Sbjct: 585 LLKYNHKQCPYIIYPSSLKAVQKLGGLQCIIRNDNLSHIFNCSRKY 630
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 523 MSEFKFLEYNNCAGDGM*GLGVFL*FSKPRYGSEPSSLHFLRIFLNIFTPLSLNPF 356
+S F + + C DG+ G V L + + + + L +F+ F+P +++PF
Sbjct: 452 ISLFVIIFTSYCDSDGLIGNCVLLVYVDGLWSVKTNGFRQLSLFILSFSPQNISPF 507
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 9.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +3
Query: 393 NILRKCNEDGSDPYLGLLNYRNTPKPYMPS---PAQLLYSRNLNSLIPVPRSTLKPKLF 560
N+ +K +DG+ L + R P P+ P+ LL R+ + P P L PKLF
Sbjct: 403 NLGKKGLKDGTTNTLQIPAVRLPSLPSSPTIKNPSGLLLKRSNSIDFPTPPKALCPKLF 461
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 578 IFTVTIKQFRLKCASRYWYE 519
IF V + FR KC +WY+
Sbjct: 1105 IFEVLLSDFRHKCYDPHWYK 1124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,811
Number of Sequences: 5004
Number of extensions: 60942
Number of successful extensions: 174
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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