Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E16
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 31 0.90
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 31 0.90
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 31 0.90
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 29 3.6
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 29 3.6
AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical ... 28 6.4
Z83116-8|CAB05567.1| 397|Caenorhabditis elegans Hypothetical pr... 28 8.4
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +3
Query: 120 NKDYLVFMDYYTKFIEVCKLDNLTSDCVIVNC--KSIFGRHGIPSFVVTDCGTQFTSXXX 293
N+ L +D +TK+ + + ++ V+ + G IP ++TD G +F +
Sbjct: 1638 NRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLF 1697
Query: 294 XXXXXXXXXXHIKSSPKHSQSNGLSESGVKIFKNILRK 407
HI + +S++NG E K +I++K
Sbjct: 1698 AQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK 1735
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +3
Query: 120 NKDYLVFMDYYTKFIEVCKLDNLTSDCVIVNC--KSIFGRHGIPSFVVTDCGTQFTSXXX 293
N+ L +D +TK+ + + ++ V+ + G IP ++TD G +F +
Sbjct: 1541 NRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLF 1600
Query: 294 XXXXXXXXXXHIKSSPKHSQSNGLSESGVKIFKNILRK 407
HI + +S++NG E K +I++K
Sbjct: 1601 AQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK 1638
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 31.1 bits (67), Expect = 0.90
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Frame = +3
Query: 120 NKDYLVFMDYYTKFIEVCKLDNLTSDCVIVNC--KSIFGRHGIPSFVVTDCGTQFTSXXX 293
N+ L +D +TK+ + + ++ V+ + G IP ++TD G +F +
Sbjct: 1552 NRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLF 1611
Query: 294 XXXXXXXXXXHIKSSPKHSQSNGLSESGVKIFKNILRK 407
HI + +S++NG E K +I++K
Sbjct: 1612 AQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKK 1649
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Frame = +3
Query: 357 NGLSESGVKIFKNILRKCNEDG----SDPYLGLLNYRNTPKPYMPSPAQLLYSR----NL 512
NG + KI + L+ C+++ +D + L+ RN PKP+ S L++ + NL
Sbjct: 390 NGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENL 449
Query: 513 NSLIPVPRSTLKPKLFYCDSKYYNHLNSVKKNYDK 617
+ P+ L P L+ +K LN ++++ D+
Sbjct: 450 ENYRPI---CLLPVLYKVFTKCL--LNRMRRSLDE 479
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Frame = +3
Query: 357 NGLSESGVKIFKNILRKCNEDG----SDPYLGLLNYRNTPKPYMPSPAQLLYSR----NL 512
NG + KI + L+ C+++ +D + L+ RN PKP+ S L++ + NL
Sbjct: 561 NGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENL 620
Query: 513 NSLIPVPRSTLKPKLFYCDSKYYNHLNSVKKNYDK 617
+ P+ L P L+ +K LN ++++ D+
Sbjct: 621 ENYRPI---CLLPVLYKVFTKCL--LNRMRRSLDE 650
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 29.1 bits (62), Expect = 3.6
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 8/95 (8%)
Frame = +3
Query: 357 NGLSESGVKIFKNILRKCNEDG----SDPYLGLLNYRNTPKPYMPSPAQLLYSR----NL 512
NG + KI + L+ C+++ +D + L+ RN PKP+ S L++ + NL
Sbjct: 300 NGKAAGQDKISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENL 359
Query: 513 NSLIPVPRSTLKPKLFYCDSKYYNHLNSVKKNYDK 617
+ P+ L P L+ +K LN ++++ D+
Sbjct: 360 ENYRPI---CLLPVLYKVFTKCL--LNRMRRSLDE 389
>AL117206-1|CAB60446.1| 644|Caenorhabditis elegans Hypothetical
protein Y67A10A.1 protein.
Length = 644
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 546 KPKLFYCDSKYYNHLNSVKKNYDKCAKELPQLKLHQEVYFKK 671
KP + + ++Y N++ + + DK +++ + H E Y KK
Sbjct: 489 KPDVLFIVARYMNNIKNPVQKDDKIVQQINETIAHYEKYVKK 530
>Z83116-8|CAB05567.1| 397|Caenorhabditis elegans Hypothetical
protein M01B2.10 protein.
Length = 397
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 430 GSEPSSLHFLRIFLNIFTPLSLNPFD*ECFGLDFMCS 320
GS PSS F I +++ L LNPF + DF C+
Sbjct: 257 GSLPSSSPFGNIRMDVDCNLILNPFKHSFYFADFYCN 293
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,299,469
Number of Sequences: 27780
Number of extensions: 339189
Number of successful extensions: 833
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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