Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E16
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.2  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.5  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = +3

Query: 408 CNEDGSDPYLGLLNYRNTPKPYMPSPAQLLYSRNLNSL 521
           C+    + +L LLN+     P +  P Q ++S  +  L
Sbjct: 30  CSASNGELFLALLNFFVATSPVIGEPCQRVHSSRIPDL 67


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 587 MVIIFTVTIKQFRLKCASRYWYE 519
           MVII    I+ +  K  S YW E
Sbjct: 328 MVIILPDGIRNYLTKFVSEYWME 350


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 447 NYRNTPKPYMPSPAQLLYSRNLNSLIPVP 533
           NY N    Y  +  +L Y+ N    IPVP
Sbjct: 336 NYNNYNNNYNNNYKKLYYNINYIEQIPVP 364


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 492 LLYSRNLNSLIPVPRSTLKPKLFYCDSKYYNHLNSVKKNYD 614
           +L S  +N  +PV      PKL   D K  NHL  ++  +D
Sbjct: 138 VLDSGLVNRTVPV----CAPKLHVFDLKTSNHLKQIEIPHD 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,692
Number of Sequences: 438
Number of extensions: 4542
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)