Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_F_E14
(825 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 51 2e-07
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 34 0.028
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.8
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 27 2.4
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.4
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 27 3.2
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 27 4.3
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 26 7.5
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 7.5
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 7.5
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 7.5
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 51.2 bits (117), Expect = 2e-07
Identities = 54/227 (23%), Positives = 98/227 (43%), Gaps = 11/227 (4%)
Frame = +1
Query: 124 LLXLQFGHXSNYVGAHFWNXQALSFDYSGTATTDLNHDILYREGQTSRNEVTYT-PRLLI 300
+L + FG SN+ HFWN Q F Y +N + +R + E T PR I
Sbjct: 4 ILTVTFGRKSNFCWTHFWNTQESYFVYDPNDHAKVNVNTNFRVLKKRDPEAIVTVPRECI 63
Query: 301 ADLKGALKTLPQSG--GLSDDAQETDLQWD-TVEKIEEPPPEKNQYLAAIDSVQTTVADG 471
D ++ L++ + WD + +I + P + + Y A+ S + + +G
Sbjct: 64 YDTPIEFGNTRKNWLEELNESSGGKGTAWDGKLTQIMQTPVDVHPYQEALWS-RDEIHEG 122
Query: 472 ---KKDYNLE----ENVITWTDYLYPRFHSRTVNVVNEYQHGSNKEAFDIYPTGRGVWKS 630
+ +Y L ++V W+D+ + + VN + S+ +F + +
Sbjct: 123 NAIESEYELPSIRPKSVKYWSDFNRLFLDTEYLFPVNCSELNSSDFSFQLGVERFHDFDK 182
Query: 631 DYGDLFSDNIRKYVEECDSMQGFQINFDCTDGFAGLALGCIXHLSDE 771
+ +++ + +R VEECDS+QGFQ D + G A + + DE
Sbjct: 183 QF-NVWDEGLRPLVEECDSVQGFQAAIDIDTPWGGFASEYMKVVQDE 228
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 33.9 bits (74), Expect = 0.028
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 589 AFDIYPTGRGVWKSDYGDLFSDNIRKYVEECDSMQGFQINFDCTDGF-AGLALGCIXHLS 765
A +I+ G ++ D D +R+ E CD++QGFQ+ G +G+ + +
Sbjct: 97 AGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIR 156
Query: 766 DEYTKPILA 792
+EY ++A
Sbjct: 157 EEYPDRMMA 165
Score = 27.1 bits (57), Expect = 3.2
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Frame = +1
Query: 124 LLXLQFGHXSNYVGAHFWNXQA--LSFDYSGT--ATTDLNHD---ILYREGQTSRNEVTY 282
++ +Q G N VGA FW+ A D +G T++ H+ + + E + Y
Sbjct: 4 IVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGK----Y 59
Query: 283 TPRLLIADLKGALKTLPQSG 342
PR ++ DL+ +SG
Sbjct: 60 VPRAVLVDLEPGTMDAVKSG 79
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 346 LSDDAQ-ETDLQWDTVEKIEEPPPEKNQYLAAIDSVQTTVADG--KKDYNLEE 495
+SDD + ++Q D E +PPPE +L + ++ +G KD +LE+
Sbjct: 4055 MSDDVGIDDEIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLED 4107
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 705 YLKTLHAVTFFNIFSDIVTK*ITIIRF-PYSSTSGIDVKSFLITSVLILIYYIHSSRMKT 529
+ + +TFFNIF + I +I F P+ V + + +++L+ + + R T
Sbjct: 119 FFNVIGTITFFNIFITAIAFVICVITFVPHIQWPSWLVLANVGIQLIVLLLLLVARRQAT 178
Query: 528 RIQ 520
R+Q
Sbjct: 179 RLQ 181
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 325 TLPQSGGLSDDAQETDLQWDTVEKIEEPPPEKNQYLAAIDSVQTTVADGKK 477
+L ++ DD+ D W T+E PP ++ L A+DS T+ K+
Sbjct: 133 SLSETSNALDDSCFND-DWITIESEFSPPIDRGMTLEAMDSQNDTLFTSKQ 182
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 382 DTVEKIEEPPPEKNQYLAAIDSVQTTVADGKKDYN--LEENVITWTDYL 522
+ + +P PEK ++L + V D K YN +E+ + TD++
Sbjct: 13 EVISDAPKPTPEKGEFLGRVIRVAFNPIDWKTLYNASIEKGTVGGTDFV 61
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 588 FLITSVLILIYYIHSSRMKTRIQVICPSDYILFK 487
FL VL +Y+ SS+ T IQ + DY L++
Sbjct: 433 FLDGFVLRNVYFRESSKEATEIQTLIDEDYALYQ 466
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 346 LSDDAQETDLQWDTVEKIEEPPPEK 420
+ D + T QW+ VE +PPP K
Sbjct: 5 VEDGSFITSSQWENVEASPKPPPRK 29
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 445 SVQTTV-ADGKKDYNLEENVITWTDYLYPRFHSRTVNVVNEYQHGSNKEAFDIYPTGRGV 621
+++ TV AD + E+ ++ YP +T +N++ HG F I RG
Sbjct: 1938 TIENTVPADPANPDSTEQVLMEAGQVWYPNSAFKTAQAINDFNHGEQLPLF-ILANWRG- 1995
Query: 622 WKSDYGDLFSDNIRKY 669
+ D+F++ + KY
Sbjct: 1996 FSGGQRDMFNE-VLKY 2010
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 253 GQTSRNEVTYTPRLLIADLKGALKTLPQS 339
G+T +N VT PR ++ D++ + L Q+
Sbjct: 22 GETKQNTVTEVPRTVLQDVEANIAALMQA 50
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 358 RHPRDHHFVVEFLKPLSNQLSVIWVCKLLHSSTF 257
R P D F+VE L + ++ +C LLHS +
Sbjct: 606 RLPWDPQFLVESLTDSTIYMAYYTICHLLHSDVY 639
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,621
Number of Sequences: 5004
Number of extensions: 68391
Number of successful extensions: 205
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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