Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E13
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187...    31   1.1  
04_02_0012 + 8537124-8537464,8537558-8537693,8538811-8538861,854...    30   2.6  
10_08_0649 + 19589807-19591024                                         29   4.5  
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    29   5.9  

>04_01_0168 -
           1874297-1874645,1874968-1875137,1875688-1875807,
           1876750-1876812
          Length = 233

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -1

Query: 457 P*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCIT 320
           P T  + T A   S S + C DSPT +T++G  T +     S   T
Sbjct: 4   PTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAAT 49


>04_02_0012 +
           8537124-8537464,8537558-8537693,8538811-8538861,
           8540190-8540413,8540491-8540715,8541520-8541619,
           8541703-8541763,8543029-8543100,8543183-8543406
          Length = 477

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = -1

Query: 487 WCPIKCTGPEP*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNS 311
           W P +C G  P      + ASG+ +     +  P FN A  SF        S  +  NS
Sbjct: 141 WLPCQCDGCTP----PASAASGSQVGTEYLITRPLFNPARASFYIPSMSSTSQAVPCNS 195


>10_08_0649 + 19589807-19591024
          Length = 405

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 449 CSGFGASTLNWTPSPW 496
           C+G+GA+  +W P PW
Sbjct: 31  CAGWGAAAASWRPRPW 46


>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
            32574554-32574887,32574915-32575037,32575193-32575394,
            32575915-32576097,32576332-32576436,32576553-32576760,
            32577025-32577170,32577321-32577443,32577490-32577698,
            32577931-32578152,32578189-32578198,32578710-32578763,
            32580841-32581052,32581620-32581772,32582071-32582158,
            32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 445  VNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSSGLASG 293
            V + G  G  + R     SP F    G+   +C D A+  + +  SG+A G
Sbjct: 1140 VRLAGYEGIDLGRPAATVSPEFRVTLGTANGACVDRAAVTVLY--SGVALG 1188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,232,303
Number of Sequences: 37544
Number of extensions: 365802
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)