Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E13
         (826 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.85 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.85 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   7.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.9  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 391 SPTFNTATGSFTASC-SDMASTCITFNSSGLASGPNN 284
           SP+   + GSFTA C S++ ST  +  +  +A  P N
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPN 100


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 391 SPTFNTATGSFTASC-SDMASTCITFNSSGLASGPNN 284
           SP+   + GSFTA C S++ ST  +  +  +A  P N
Sbjct: 64  SPSGPNSPGSFTAGCHSNLLSTSPSGQNKAVAPYPPN 100


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 115 RCTQRLRNGDQCWH*KRHSRCKFDKLR 35
           +C    +N D+C   ++ SRC  D ++
Sbjct: 100 QCVDNAKNEDKCLTAQKFSRCVIDYVK 126


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = +3

Query: 195 TLSSSHQSETWDPEAKAEYPRSNKLV-----IRQALLGPDAKPDELN-----VIQVEAMS 344
           ++SSS +++ W P+   E    N L+      +   +G   K D +N     + Q+ A  
Sbjct: 377 SISSSEENDFWQPKPTLEDAPQNSLLPNFVGYKGKHIGKSGKVDVINAAKELIFQI-ANE 435

Query: 345 LQEAVKLPV 371
           L++A  +PV
Sbjct: 436 LEDASNIPV 444


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 688 PKAKLHRPRRMPXNEQTAXRPILG 759
           P   +H P   P N Q A + I+G
Sbjct: 457 PTRYIHEPWNAPLNVQRAAKCIIG 480


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 269 RHSSSIVRSRCQTR*IKCDTGG 334
           +H SS   + C    ++C TGG
Sbjct: 282 QHRSSSASTTCSGHTVRCFTGG 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,263
Number of Sequences: 438
Number of extensions: 3638
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)