Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_F_E12
         (474 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    25   0.27 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.27 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   4.4  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    21   7.7  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   7.7  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 141 LCTSLASTSDLAK*CVCCRCVGDNAGLYSSGEPGDTGPLFDIEANHC 1
           +CT      D +   V   CV D + L S     + G ++D+E N C
Sbjct: 442 VCTKEGIVRDPSDCSVYYTCVSDGSKLVSIQRKCNHGLVYDLELNIC 488


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 0.27
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 200 HYKHAPPKAVFIQHSAEEHDLLSSDTDTPVNAYEGEVGG 316
           HY++  P+ + + +    +  + S+  TPV  ++ EVGG
Sbjct: 373 HYQN--PEYISVVNPESPYPQIGSERATPVGYHQNEVGG 409


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 80  LATTLDCTRAESRETPDRCSI 18
           L TTL CT+A     PD CSI
Sbjct: 417 LTTTL-CTKAGYVRDPDDCSI 436


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 80  THRQHTHHLAKSDVEASEVHKSRHVSQLAELDH 178
           T+ Q+ HH A   + A     + HV+    L H
Sbjct: 317 TNNQNHHHHAGHHIHAQHHVVNHHVAANGSLKH 349


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +2

Query: 56  EYSPALSPTHRQHTHHLAKSDVEASEVHKSRHVSQLAELD 175
           E     +P H     HL +S     E  K +H+ Q    D
Sbjct: 98  ELETKFNPHHEIKLQHLHQSKFNPHEEVKLQHLHQFPHHD 137


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 98  HHLAKSDVEAS 130
           HHLAKSD  ++
Sbjct: 77  HHLAKSDTSSA 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,185
Number of Sequences: 336
Number of extensions: 1128
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11036865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)